Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 7.9e-180 633.6 317 100.0
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 8.5e-166 587.0 312 92.6
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.7e-164 581.3 312 92.6
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 2.3e-163 578.9 312 90.7
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 3.9e-163 578.2 312 91.0
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 9.7e-162 573.5 312 91.7
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.3e-161 573.2 312 89.1
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.7e-161 572.8 312 90.7
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.7e-161 572.8 312 90.4
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.8e-161 572.0 312 91.0
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 2.8e-161 572.0 312 89.7
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 2.8e-161 572.0 312 90.4
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.8e-161 572.0 312 90.1
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.7e-161 571.6 312 90.7
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.8e-161 571.2 312 88.8
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.8e-161 571.2 312 88.8
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 4.8e-161 571.2 312 89.4
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 4.8e-161 571.2 312 89.1
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 6.3e-161 570.9 312 90.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.8e-160 569.3 312 90.1
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.8e-160 569.3 312 89.1
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.1e-160 568.5 312 89.4
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 3.1e-160 568.5 312 89.4
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 3.1e-160 568.5 312 90.1
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.3e-160 567.8 312 88.5
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 5.3e-160 567.8 312 89.1
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 7.0e-160 567.4 312 89.7
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 7.0e-160 567.4 312 89.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 9.1e-160 567.0 312 89.1
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 9.1e-160 567.0 312 89.4
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.2e-159 566.6 311 89.1
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.6e-159 566.2 312 89.4
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.6e-159 566.2 312 88.5
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 3.5e-159 565.1 312 89.4
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.5e-159 565.1 312 88.5
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 3.5e-159 565.1 312 90.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 4.5e-159 564.7 312 88.5
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.9e-159 564.3 312 88.5
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.9e-159 564.3 312 88.5
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 5.9e-159 564.3 312 89.1
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 5.9e-159 564.3 312 89.1
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 5.9e-159 564.3 312 88.5
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 7.7e-159 563.9 312 90.1
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 7.7e-159 563.9 343 84.0
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 7.7e-159 563.9 312 88.8
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.0e-158 563.5 312 88.5
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.0e-158 563.5 312 89.4
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.3e-158 563.1 312 89.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.3e-158 563.1 312 89.4
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.7e-158 562.8 312 88.1
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.7e-158 562.8 312 88.5
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 2.2e-158 562.4 312 88.8
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 3.8e-158 561.6 312 87.5
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 3.8e-158 561.6 312 88.5
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.8e-158 561.6 312 88.1
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 5.0e-158 561.2 312 88.1
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 6.5e-158 560.8 312 88.8
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 8.5e-158 560.5 312 88.1
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.1e-157 560.1 312 88.1
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 1.5e-157 559.7 312 87.8
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 2.5e-157 558.9 312 89.1
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 3.2e-157 558.5 312 87.5
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 3.2e-157 558.5 312 87.2
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.2e-157 558.5 312 88.5
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 3.2e-157 558.5 312 88.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.2e-157 558.1 312 87.8
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 5.5e-157 557.8 312 87.5
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 5.5e-157 557.8 312 87.8
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 7.2e-157 557.4 312 87.5
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 7.2e-157 557.4 312 87.2
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 7.2e-157 557.4 312 87.2
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 7.2e-157 557.4 312 87.8
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 7.2e-157 557.4 312 88.1
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.2e-157 557.4 312 86.9
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 7.2e-157 557.4 312 87.8
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 9.4e-157 557.0 313 87.5
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 9.4e-157 557.0 313 87.9
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 9.4e-157 557.0 313 87.5
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 9.4e-157 557.0 313 87.5
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 9.4e-157 557.0 313 87.5
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 9.4e-157 557.0 313 87.5
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 9.4e-157 557.0 312 87.2
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 9.4e-157 557.0 312 87.2
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 1.2e-156 556.6 312 88.1
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 1.2e-156 556.6 312 88.5
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.2e-156 556.6 313 87.5
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 2.1e-156 555.8 313 87.5
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 2.1e-156 555.8 313 87.5
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.1e-156 555.8 334 83.8
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.7e-156 555.4 312 87.8
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 2.7e-156 555.4 313 87.2
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 4.7e-156 554.7 312 88.1
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 6.1e-156 554.3 312 86.9
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 6.1e-156 554.3 312 87.2
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 8.0e-156 553.9 312 85.9
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.0e-155 553.5 312 87.8
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 1.0e-155 553.5 312 87.5
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 1.0e-155 553.5 313 87.2
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.4e-155 553.1 313 87.2
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.4e-155 553.1 312 87.5
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 2.3e-155 552.4 336 82.7
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 2.3e-155 552.4 312 86.9
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.3e-155 552.4 312 85.6
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 6.7e-155 550.8 312 86.2
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 8.8e-155 550.4 312 86.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 8.8e-155 550.4 312 86.5
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 7.5e-154 547.4 312 85.9
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.7e-153 546.2 312 86.5
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.7e-153 546.2 312 86.5
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.2e-153 545.8 312 86.2
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.8e-153 545.4 312 86.2
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 6.3e-153 544.3 312 85.9
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 8.5e-150 533.9 312 83.7
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.5e-149 533.1 356 76.4
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.5e-149 531.2 328 79.6
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.8e-147 526.2 294 87.1
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.3e-147 525.8 331 81.3
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.0e-146 522.7 312 80.8
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 5.7e-146 521.2 312 80.1
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.3e-145 520.0 312 84.0
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 7.0e-144 514.2 312 81.1
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 9.1e-144 513.8 312 79.2
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.1e-140 501.1 312 79.5
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 5.7e-138 494.6 292 83.6
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 6.3e-137 491.1 314 75.2
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.7e-135 485.7 312 77.6
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.0e-127 459.5 314 71.0
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 3.0e-126 455.7 313 70.0
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 4.0e-123 445.3 317 68.1
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.3e-118 430.3 312 70.5
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.6e-117 424.9 255 82.0
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 7.3e-117 424.5 320 69.7
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.5e-114 416.8 237 87.3
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.5e-114 416.8 316 63.9
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 2.0e-114 416.4 319 70.5
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 3.2e-112 409.1 237 84.0
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 7.1e-112 407.9 230 87.4
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.0e-111 404.8 294 72.8
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 2.1e-108 396.4 237 80.6
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.8e-92 342.8 325 53.8
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.8e-92 342.0 199 85.4
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 2.2e-89 333.2 178 88.8
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.2e-72 276.2 171 85.4
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.5e-50 204.1 117 88.0
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 4.5e-50 202.6 178 62.4
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 5.5e-48 195.7 99 93.9
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 7.2e-48 195.3 99 93.9
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 6.5e-41 172.2 98 82.7
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 6.1e-39 165.6 105 81.9
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 2.6e-37 160.2 307 33.2
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.3e-30 137.1 76 85.5
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 6.8e-30 135.6 76 85.5
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.4e-29 133.3 75 85.3
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.8e-28 130.2 88 71.6
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 3.7e-12 76.6 41 85.4
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 3.5e-10 70.1 141 30.5
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 3.0e-09 67.0 53 62.3
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.9e-08 64.3 38 86.8


User provided reference genes

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