Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 7.1e-231 803.9 506 100.0
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.3e-163 580.5 510 70.6
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 9.1e-162 574.3 513 73.1
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 8.5e-160 567.8 517 69.8
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 6.1e-158 561.6 437 75.7
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 2.0e-156 556.6 504 70.2
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.7e-155 553.5 436 75.0
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 1.1e-154 550.8 507 68.8
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 9.1e-154 547.7 507 70.2
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.0e-153 546.6 509 69.7
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.0e-152 544.3 437 74.6
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 1.0e-152 544.3 433 74.4
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.2e-152 543.1 504 68.5
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 3.8e-152 542.3 438 71.9
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 5.0e-152 542.0 442 69.0
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 1.5e-151 540.4 434 72.6
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.9e-151 540.0 439 73.3
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 7.2e-151 538.1 435 73.3
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 1.2e-150 537.3 504 70.2
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.2e-150 537.3 435 72.0
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 2.1e-150 536.6 435 72.0
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 5.2e-149 531.9 505 69.3
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 6.8e-149 531.6 435 71.3
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 6.8e-149 531.6 505 71.3
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 3.4e-148 529.3 436 68.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 7.5e-148 528.1 424 72.6
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 8.3e-147 524.6 435 74.5
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 8.3e-147 524.6 506 68.0
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.1e-146 524.2 436 71.1
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.6e-145 520.4 515 64.5
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 3.5e-145 519.2 481 62.4
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 5.9e-145 518.5 441 68.3
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 1.3e-144 517.3 449 70.8
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 3.8e-144 515.8 332 81.9
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 6.5e-144 515.0 435 70.1
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 4.2e-143 512.3 433 69.3
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 5.5e-143 511.9 488 67.4
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 9.4e-143 511.1 422 74.9
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 2.1e-142 510.0 394 75.1
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 4.7e-142 508.8 515 65.0
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 8.0e-142 508.1 414 71.5
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.8e-141 506.9 434 68.2
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 4.0e-141 505.8 434 71.2
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 8.8e-141 504.6 435 68.3
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 3.7e-139 499.2 388 68.8
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.8e-138 496.9 439 68.8
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 5.4e-138 495.4 448 63.8
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 7.7e-137 491.5 442 70.4
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.0e-136 491.1 434 71.4
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.3e-136 490.7 429 69.9
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.7e-136 490.3 439 67.0
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 2.3e-136 490.0 438 67.1
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 5.0e-136 488.8 468 65.0
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 3.3e-135 486.1 434 66.8
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.3e-135 486.1 448 62.3
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 3.3e-135 486.1 426 65.0
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 7.3e-135 485.0 405 69.9
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 3.6e-134 482.6 434 65.9
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.0e-133 481.1 402 72.6
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.2e-132 477.6 439 65.8
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.3e-131 474.2 518 62.4
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 5.9e-129 465.3 448 66.1
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 1.0e-128 464.5 418 70.8
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 3.3e-127 459.5 446 63.0
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 4.3e-127 459.1 484 64.9
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.8e-125 453.8 444 62.8
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 3.1e-125 453.0 512 60.5
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 7.5e-124 448.4 439 64.7
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.2e-123 446.8 406 66.7
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 2.2e-123 446.8 468 59.6
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 3.7e-123 446.0 521 61.4
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 6.4e-123 445.3 443 63.9
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 8.3e-123 444.9 521 62.2
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 1.4e-122 444.1 380 70.3
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 9.2e-122 441.4 389 68.1
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.2e-121 441.0 667 47.7
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.6e-121 440.7 389 68.9
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.3e-120 437.6 391 68.5
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 3.3e-119 433.0 401 64.8
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 5.6e-119 432.2 443 62.5
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 2.1e-118 430.3 440 62.0
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 8.1e-118 428.3 333 70.0
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 8.1e-118 428.3 514 57.6
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 4.0e-117 426.0 421 60.1
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 6.8e-117 425.2 530 55.8
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 2.6e-116 423.3 530 55.8
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 8.3e-115 418.3 357 75.1
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 8.3e-115 418.3 445 60.0
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 3.0e-112 409.8 519 60.5
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 3.0e-112 409.8 398 63.1
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 1.9e-111 407.1 353 69.4
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 4.3e-111 406.0 528 58.0
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 5.6e-111 405.6 367 60.8
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 2.8e-110 403.3 278 76.6
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.8e-109 400.6 514 59.9
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 6.8e-109 398.7 326 66.0
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 7.6e-108 395.2 514 59.7
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.0e-104 384.8 446 54.7
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 3.0e-104 383.3 444 54.7
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.1e-103 381.3 290 69.0
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 3.3e-103 379.8 526 52.9
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 7.3e-103 378.6 366 61.7
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.6e-102 377.5 451 54.1
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 9.9e-100 368.2 362 63.8
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.7e-99 367.5 460 54.3
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.7e-99 367.5 460 54.3
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.3e-95 353.2 230 78.7
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 8.1e-94 348.6 438 50.2
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 9.9e-92 341.7 252 70.6
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 7.6e-84 315.5 434 49.8
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 3.8e-83 313.2 451 48.1
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.1e-81 307.4 433 49.4
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 5.6e-79 299.3 342 50.0
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 5.7e-71 272.7 408 48.5
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.3e-67 261.5 227 58.6
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 6.7e-64 249.2 414 43.0
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.1e-63 248.4 206 60.2
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.4e-61 241.5 413 40.4
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 1.3e-59 235.0 378 49.2
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 3.4e-52 210.3 351 40.2
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 4.5e-52 209.9 372 41.1
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 3.2e-50 203.8 197 65.0
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.6e-47 194.1 291 41.2
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 3.5e-44 183.7 210 55.7
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 4.2e-34 150.2 211 56.9
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 6.1e-33 146.4 210 55.7
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 8.0e-33 146.0 210 55.7
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 5.2e-24 116.7 71 77.5
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 2.9e-14 84.3 256 26.6
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 8.3e-14 82.8 84 54.8
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 4.6e-12 77.0 95 51.6
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 4.6e-12 77.0 95 51.6
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 3.9e-11 73.9 328 25.3
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 5.0e-11 73.6 65 63.1
GSVIVG01006101001 Vitis vinifera HOM05D005480 ORTHO05D006735 9.5e-10 69.3 78 61.5
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 1.8e-08 65.1 109 44.0
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 6.8e-08 63.2 196 30.6
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 1.2e-07 62.4 96 47.9


User provided reference genes

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