Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 6.3e-233 810.4 424 100.0
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.6e-212 742.7 424 90.3
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.7e-206 722.6 424 87.3
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 6.6e-206 720.7 424 88.0
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.1e-205 719.9 420 88.1
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.6e-204 716.1 420 87.6
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.6e-204 716.1 419 87.4
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.1e-204 715.7 420 87.1
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 2.1e-204 715.7 420 87.6
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.8e-204 715.3 424 87.5
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 6.2e-204 714.1 419 87.4
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 6.2e-204 714.1 419 87.4
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.1e-203 713.4 419 87.4
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.4e-203 713.0 420 87.6
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.4e-203 713.0 420 86.7
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.4e-203 713.0 424 85.6
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.8e-203 712.6 420 86.9
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 4.0e-203 711.4 420 86.7
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 5.2e-203 711.1 417 87.8
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 86.6
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 86.9
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 86.9
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 8.9e-203 710.3 419 86.2
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 8.9e-203 710.3 420 86.7
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 8.9e-203 710.3 419 86.9
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.2e-202 709.9 419 86.6
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.2e-202 709.9 421 86.7
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.2e-202 709.9 419 86.9
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 87.1
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 86.4
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 86.4
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 2.6e-202 708.8 419 86.9
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.6e-202 708.8 420 86.4
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 3.4e-202 708.4 417 87.3
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 4.4e-202 708.0 420 86.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 5.8e-202 707.6 420 87.1
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 7.5e-202 707.2 423 86.5
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.3e-201 706.4 418 87.1
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.3e-201 706.4 419 86.2
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 1.7e-201 706.1 419 87.1
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 2.2e-201 705.7 419 86.9
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.2e-201 705.7 419 86.4
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 2.2e-201 705.7 420 85.7
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 2.9e-201 705.3 419 86.6
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.9e-201 705.3 424 85.8
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.7e-201 704.9 415 86.5
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 3.7e-201 704.9 423 86.5
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.9e-201 704.5 428 85.3
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 4.9e-201 704.5 415 86.7
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 4.9e-201 704.5 424 85.1
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 6.4e-201 704.1 424 84.9
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 6.4e-201 704.1 421 86.0
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 6.4e-201 704.1 420 86.0
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 8.3e-201 703.7 424 85.4
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 8.3e-201 703.7 420 85.7
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 1.1e-200 703.4 419 86.6
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.1e-200 703.4 419 86.2
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.1e-200 703.4 419 86.2
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.4e-200 703.0 421 86.2
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.4e-200 703.0 424 85.6
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.4e-200 703.0 424 85.4
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.9e-200 702.6 419 86.4
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.9e-200 702.6 424 85.1
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.9e-200 702.6 420 85.5
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 4.1e-200 701.4 420 85.7
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 7.0e-200 700.7 419 86.4
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 7.0e-200 700.7 420 86.0
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 7.0e-200 700.7 420 85.2
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 7.0e-200 700.7 417 85.6
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 9.2e-200 700.3 419 86.2
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 9.2e-200 700.3 419 86.4
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 9.2e-200 700.3 419 86.4
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 9.2e-200 700.3 419 86.4
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.2e-199 699.9 420 85.7
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.6e-199 699.5 424 84.4
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.6e-199 699.5 420 85.0
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 2.7e-199 698.7 419 86.2
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 2.7e-199 698.7 421 85.5
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 3.5e-199 698.4 421 85.7
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 4.6e-199 698.0 424 84.4
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 6.0e-199 697.6 424 84.4
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 6.0e-199 697.6 420 85.0
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 7.8e-199 697.2 419 86.2
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 7.8e-199 697.2 422 84.6
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.3e-198 696.4 424 84.4
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.7e-198 696.0 421 85.7
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.7e-198 696.0 426 85.0
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 1.7e-198 696.0 420 85.2
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.3e-198 695.7 419 85.2
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.3e-198 695.7 416 85.8
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.0e-198 695.3 424 84.4
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.9e-198 694.9 424 84.0
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 5.0e-198 694.5 418 85.2
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 5.0e-198 694.5 422 84.1
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.0e-198 694.5 424 84.9
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 6.6e-198 694.1 424 83.7
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 8.6e-198 693.7 415 85.5
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.1e-197 693.3 422 84.1
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.1e-197 693.3 422 84.1
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-197 693.0 419 85.4
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 1.5e-197 693.0 419 85.4
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.5e-197 693.0 433 83.6
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 3.3e-197 691.8 424 83.5
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 4.3e-197 691.4 424 83.0
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.1e-196 689.1 418 85.2
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.6e-196 688.3 439 81.8
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 4.7e-196 688.0 420 83.8
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.4e-195 686.4 472 77.3
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.4e-195 686.4 472 77.3
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.3e-195 685.6 439 81.3
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 5.2e-195 684.5 453 80.4
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 2.6e-194 682.2 432 81.7
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.4e-194 681.8 433 82.4
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.3e-193 679.9 424 84.4
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 1.7e-193 679.5 449 79.1
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.6e-191 672.9 424 82.1
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.6e-191 671.4 421 81.9
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 6.0e-191 671.0 388 89.2
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 4.7e-188 661.4 389 86.9
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 3.4e-186 655.2 408 82.1
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 8.4e-185 650.6 503 71.4
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.4e-185 650.6 415 82.9
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.1e-183 646.0 424 79.7
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.6e-183 644.8 474 74.9
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 1.5e-181 639.8 373 86.6
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 5.6e-181 637.9 376 86.2
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.6e-180 635.2 363 88.4
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 8.1e-180 634.0 422 79.4
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 3.1e-179 632.1 397 80.6
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 6.9e-179 630.9 402 80.1
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 7.1e-176 620.9 374 84.8
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.3e-172 610.1 420 75.0
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 2.4e-168 595.9 424 75.2
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 5.4e-168 594.7 400 74.0
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.3e-165 585.5 408 76.2
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 5.1e-158 561.6 330 85.2
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 3.7e-156 555.4 309 90.6
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 8.7e-150 534.3 422 65.9
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.3e-148 530.4 396 67.9
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 4.2e-144 515.4 398 65.8
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.2e-137 493.0 458 62.9
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 2.9e-137 492.7 280 90.4
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.0e-134 484.2 284 84.9
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 6.1e-127 458.4 260 89.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 6.1e-127 458.4 392 66.6
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.4e-115 419.9 243 88.9
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 3.6e-103 379.4 232 81.5
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.6e-98 364.0 225 81.8
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.7e-97 360.5 244 75.4
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 4.7e-95 352.4 205 86.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 7.0e-83 312.0 289 62.6
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 6.2e-71 272.3 287 50.5
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 3.4e-69 266.5 247 59.5
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.1e-62 245.0 147 81.0
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 2.1e-58 230.7 189 60.3
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 1.3e-49 201.4 181 65.7
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 7.4e-48 195.7 135 71.9
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 2.4e-46 190.7 114 91.2
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 4.0e-46 189.9 130 70.8
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 1.0e-36 158.7 287 35.5
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.9e-36 157.1 150 60.7
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.4e-35 154.8 156 60.3
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 1.9e-35 154.5 156 59.6
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 3.9e-33 146.7 105 73.3
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 4.1e-30 136.7 178 40.4
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 7.4e-24 115.9 129 51.9
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.3e-23 115.2 78 75.6
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.3e-22 109.8 69 75.4
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.8e-14 84.7 50 92.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 3.1e-14 84.0 53 83.0
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 4.5e-13 80.1 409 27.4
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 5.0e-12 76.6 40 97.5
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 1.1e-11 75.5 160 36.9
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 8.0e-10 69.3 37 83.8
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 4.1e-06 57.0 369 24.7


User provided reference genes

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