Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 2304.2 1151 100.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1470.3 1160 64.4
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1444.1 1148 62.7
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1422.1 1159 61.3
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1419.1 1160 61.7
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1389.0 1159 60.5
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1388.6 1159 60.6
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1384.4 1162 60.9
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1370.5 1160 60.1
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1364.4 1155 61.1
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1355.9 1163 59.8
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1353.2 1161 59.0
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1352.8 1154 59.5
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1351.7 1155 60.6
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1351.3 1158 60.0
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1350.5 1159 59.5
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1344.7 1161 59.1
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1342.4 1157 60.1
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1342.0 1154 59.5
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1338.6 1159 59.4
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1337.0 1184 57.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1319.3 1156 59.3
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1309.7 1158 58.2
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1308.5 1161 58.6
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1303.9 1154 58.7
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1297.3 1159 57.9
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1296.6 1159 58.0
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1286.6 1155 58.3
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1278.8 1163 58.6
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1270.0 1159 57.0
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1270.0 1162 56.6
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1265.4 1162 56.5
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1264.6 1160 56.1
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1259.2 1161 56.3
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1239.2 1173 55.9
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1231.9 1182 54.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1225.3 1157 55.6
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1224.2 1158 54.7
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1221.5 1162 56.1
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1219.9 1158 55.4
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1219.5 1156 55.7
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1215.3 1155 54.1
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1213.4 1161 55.0
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1210.7 1151 54.7
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1209.5 1159 54.8
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1208.7 1155 53.5
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1207.2 1162 55.2
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1206.8 1155 55.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1204.1 1149 54.0
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1202.6 1164 54.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1201.4 1102 56.5
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1200.3 1156 54.2
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1195.6 1162 53.4
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1191.4 1168 53.9
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1191.4 1168 53.9
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1188.7 1169 53.2
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1185.6 1187 52.6
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1184.5 1161 54.2
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1183.3 1168 53.3
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1182.2 1155 54.2
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1180.2 1161 54.2
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1169.1 1168 52.7
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1164.1 1136 53.7
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1151.7 1162 53.2
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1129.0 980 59.5
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1127.9 1161 53.1
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1125.9 1121 54.0
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1120.5 1088 52.8
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1117.8 1170 53.2
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1115.5 1174 52.7
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1112.4 1172 52.5
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1107.0 1125 51.7
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1101.7 1166 52.3
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1101.7 1166 52.2
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1098.6 1164 51.5
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1095.9 1167 51.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1095.1 1168 51.5
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1095.1 984 57.4
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1094.7 1169 52.0
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1094.3 1168 51.4
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1093.6 1168 52.1
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1086.2 1159 49.2
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1079.7 1197 50.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1078.2 1197 50.2
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 4.6e-310 1068.1 1153 49.6
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 8.0e-307 1057.4 1120 50.9
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 1.8e-306 1056.2 1169 51.0
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 9.5e-300 1033.9 1203 47.5
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 3.5e-294 1015.4 1049 52.6
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 7.1e-279 964.5 1163 45.7
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 9.9e-273 944.1 1209 45.1
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.7e-272 943.3 1194 44.7
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.3e-261 907.1 1144 44.0
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 4.7e-214 749.2 1023 43.3
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 8.0e-214 748.4 591 63.6
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 7.2e-207 725.3 572 63.1
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 8.9e-205 718.4 1176 37.6
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 6.6e-200 702.2 1150 37.7
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 4.4e-188 662.9 1157 36.6
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.4e-186 657.9 571 58.3
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.3e-184 650.6 589 57.0
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-181 641.7 608 56.6
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.3e-175 619.8 797 42.9
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 1.1e-167 595.1 1089 34.8
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.8e-142 510.0 580 48.6
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 3.1e-141 507.3 477 56.6
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 5.5e-138 496.5 663 44.3
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 7.2e-138 496.1 663 44.0
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 4.6e-137 493.4 664 44.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.6e-132 477.6 585 45.3
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 9.4e-130 469.2 575 45.2
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 7.9e-129 466.1 567 43.6
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.4e-128 465.3 434 56.7
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 5.9e-116 423.3 529 46.3
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 5.9e-108 396.7 358 57.5
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-105 387.1 995 29.0
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 7.0e-101 373.2 498 43.6
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 6.8e-88 330.1 449 43.0
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.2e-79 302.8 322 52.2
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-70 272.3 451 41.0
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.7e-68 265.0 211 62.1
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 7.8e-68 263.5 333 42.9
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.7e-67 262.3 382 40.8
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-58 232.3 286 45.5
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 2.6e-55 221.9 275 46.5
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.6e-55 221.9 371 35.8
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.2e-54 218.8 193 54.4
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 2.7e-44 185.3 570 26.8
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.8e-43 182.6 227 45.8
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 4.5e-39 167.9 237 43.5
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.7e-38 166.0 135 60.0
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 2.1e-36 159.1 190 46.8
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 7.9e-36 157.1 124 58.9
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 3.1e-32 145.2 117 54.7
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 4.5e-31 141.4 194 42.3
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 1.0e-30 140.2 116 59.5
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 8.4e-30 137.1 124 53.2
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 6.0e-28 131.0 183 40.4
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 1.8e-27 129.4 118 55.9
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-26 126.7 190 40.5
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 7.4e-26 124.0 149 47.0
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 5.9e-23 114.4 105 52.4
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 4.6e-20 104.8 101 48.5
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 6.7e-19 100.9 678 22.7
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 5.1e-11 74.7 98 44.9
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 2.6e-10 72.4 98 43.9
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.3e-09 70.1 61 52.5
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 2.8e-09 68.9 57 59.6
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.4e-08 66.6 203 27.6
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 4.1e-08 65.1 54 59.3
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 5.3e-08 64.7 38 78.9
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.0e-06 60.5 44 65.9


User provided reference genes

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