Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 2604.3 1297 100.0
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1555.0 1182 66.4
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1501.9 1184 63.9
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1500.0 1183 63.8
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1494.9 1183 63.1
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1490.3 1186 63.3
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1477.6 1187 61.2
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1477.2 1182 62.9
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1476.1 1177 62.4
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1473.8 1186 63.5
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1462.2 1177 62.4
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1461.0 1180 61.9
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1459.9 1175 62.8
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1459.5 1175 62.8
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1459.5 1401 55.4
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1448.3 1175 62.4
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1438.7 1184 61.6
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1436.4 1194 61.4
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1432.9 1187 60.8
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1423.3 1188 60.2
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1422.1 1133 64.2
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1416.7 1180 60.7
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1415.2 1175 61.4
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1413.7 1195 60.1
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1407.1 1181 59.6
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1394.8 1181 59.3
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1392.9 1186 59.4
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1384.8 1189 58.9
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1382.1 1185 59.6
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1370.1 1183 58.6
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1365.1 1208 57.1
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1364.7 1182 59.6
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1360.5 1198 58.0
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1350.9 1231 56.5
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1349.3 1172 58.0
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1345.1 1188 58.1
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1344.3 1172 58.0
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1341.6 1200 57.4
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1334.3 1181 57.2
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1331.6 1172 57.2
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1322.4 1173 57.8
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1317.8 1213 56.9
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1315.8 1174 57.5
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1315.1 1173 57.7
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1314.7 1172 57.8
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1313.1 1174 57.3
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1312.0 1178 56.2
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1311.2 1178 55.9
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1304.7 1181 56.6
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1288.5 1393 50.4
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1288.1 1175 57.4
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1283.5 1173 56.0
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1283.1 1172 56.7
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1279.6 1250 53.9
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1275.4 1174 55.4
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1273.5 1037 61.9
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1272.3 1176 54.7
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1264.6 1176 55.5
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1259.6 1176 56.6
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1259.2 1174 55.3
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1258.0 1184 54.9
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1256.1 1177 54.4
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1250.3 1184 53.7
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1248.4 1181 55.1
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1247.6 1180 56.1
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1244.6 1185 55.1
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1238.0 1163 54.6
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1235.3 1181 54.2
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1233.8 1054 58.6
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1227.2 1185 54.8
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1225.7 1174 53.7
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1223.4 1208 53.9
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1207.2 1061 58.7
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1190.6 1174 53.0
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1157.5 1184 52.2
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1155.6 1185 51.5
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1155.2 1133 53.6
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1138.6 1182 50.4
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1119.8 1103 54.0
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 0.0e+00 1096.6 1193 49.7
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 0.0e+00 1096.6 1187 49.4
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1086.2 1128 50.7
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 1.5e-309 1066.6 1117 50.8
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.4e-302 1043.5 1216 47.5
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 2.8e-300 1035.8 1177 46.3
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 1.9e-288 996.5 1168 47.7
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 2.7e-274 949.5 837 58.5
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 6.8e-270 934.9 762 62.3
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.9e-240 837.0 716 59.1
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 1.5e-237 827.4 1108 43.9
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 4.2e-227 792.7 794 54.2
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.1e-200 704.9 759 49.4
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 2.3e-185 654.1 1201 35.0
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.2e-175 620.9 580 54.5
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 9.8e-168 595.5 1193 34.3
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 1.7e-151 541.6 441 61.9
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.8e-145 521.5 614 48.0
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 2.7e-141 507.7 465 53.8
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.3e-132 478.0 1123 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 7.1e-126 456.4 833 34.8
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.2e-117 429.1 391 54.2
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.3e-108 398.3 397 54.7
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.3e-108 398.3 533 42.0
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.2e-96 359.4 292 62.3
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 8.2e-90 336.7 420 41.7
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 3.7e-82 311.2 221 70.1
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 2.6e-72 278.5 186 70.4
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.4e-65 255.4 204 63.2
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-60 237.7 1111 25.5
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 2.7e-56 225.3 176 65.9
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.2e-45 189.9 206 50.0
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.8e-44 186.0 258 38.8
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.2e-35 156.8 123 63.4
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 2.8e-29 135.6 150 49.3
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 4.7e-29 134.8 350 30.6
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 3.3e-22 112.1 717 23.8
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 3.6e-21 108.6 586 22.5
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 4.4e-19 101.7 165 41.2
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 8.3e-18 97.4 66 66.7
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.2e-16 93.6 76 56.6
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 1.1e-14 87.0 53 73.6
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 2.2e-10 72.8 78 44.9
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 2.9e-10 72.4 53 67.9
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 4.9e-10 71.6 116 38.8
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 5.4e-09 68.2 58 58.6
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 5.4e-09 68.2 48 62.5
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 1.2e-08 67.0 48 62.5
TAR365G1006 Trochodendron aralioides HOM05D001130 ORTHO05D001052 8.7e-07 60.8 138 29.7
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 1.5e-06 60.1 135 31.9
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 9.6e-06 57.4 56 55.4


User provided reference genes

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