Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.4e-54 216.1 112 100.0
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.9e-43 179.1 109 79.8
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 4.2e-43 177.9 110 80.0
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 2.2e-31 139.0 79 87.3
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 8.0e-26 120.6 87 72.4
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 1.9e-19 99.4 110 46.4
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 3.2e-19 98.6 61 78.7
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 4.2e-19 98.2 58 81.0
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.1e-18 95.9 59 79.7
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 4.7e-18 94.7 102 48.0
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.0e-17 93.6 69 71.0
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 1.8e-17 92.8 54 87.0
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 4.0e-17 91.7 55 83.6
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 4.0e-17 91.7 55 83.6
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 3.3e-16 88.6 54 77.8
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 5.7e-16 87.8 52 84.6
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 7.5e-16 87.4 52 84.6
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.7e-15 86.3 51 80.4
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 2.8e-15 85.5 51 78.4
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 2.8e-15 85.5 51 78.4
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 2.8e-15 85.5 52 76.9
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 3.7e-15 85.1 51 78.4
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 8.2e-15 84.0 99 44.4
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 8.2e-15 84.0 50 86.0
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 8.2e-15 84.0 51 82.4
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.8e-14 82.8 49 81.6
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 2.4e-14 82.4 51 80.4
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 3.1e-14 82.0 48 83.3
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 3.1e-14 82.0 53 75.5
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 4.1e-14 81.6 47 85.1
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 5.3e-14 81.3 49 81.6
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 7.0e-14 80.9 48 83.3
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 7.0e-14 80.9 51 76.5
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 7.0e-14 80.9 50 76.0
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 9.1e-14 80.5 47 83.0
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 1.2e-13 80.1 48 83.3
SEGI_07154 Sequoiadendron giganteum HOM05D007456 ORTHO05D009411 1.6e-13 79.7 71 56.3
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 2.0e-13 79.3 45 86.7
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 2.0e-13 79.3 45 86.7
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 2.0e-13 79.3 47 80.9
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 2.0e-13 79.3 45 86.7
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 4.5e-13 78.2 47 83.0
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 4.5e-13 78.2 47 83.0
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 5.9e-13 77.8 45 82.2
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 7.7e-13 77.4 47 80.9
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.0e-12 77.0 45 82.2
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.0e-12 77.0 45 82.2
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 1.0e-12 77.0 44 84.1
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 1.3e-12 76.6 46 82.6
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 1.7e-12 76.3 46 76.1
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 2.2e-12 75.9 65 56.9
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 2.9e-12 75.5 43 83.7
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 3.8e-12 75.1 44 81.8
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 3.8e-12 75.1 44 81.8
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 5.0e-12 74.7 47 76.6
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 5.0e-12 74.7 48 75.0
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 6.5e-12 74.3 45 80.0
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 8.5e-12 73.9 41 85.4
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 8.5e-12 73.9 41 85.4
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 8.5e-12 73.9 41 85.4
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 8.5e-12 73.9 41 85.4
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 8.5e-12 73.9 41 85.4
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 8.5e-12 73.9 41 85.4
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 8.5e-12 73.9 45 80.0
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 1.9e-11 72.8 43 81.4
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.9e-11 72.8 45 75.6
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 3.2e-11 72.0 46 73.9
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 3.2e-11 72.0 44 77.3
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 5.5e-11 71.2 46 76.1
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 5.5e-11 71.2 53 62.3
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 7.2e-11 70.9 47 78.7
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 7.2e-11 70.9 47 78.7
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 9.4e-11 70.5 43 74.4
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 9.4e-11 70.5 47 78.7
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 9.4e-11 70.5 47 78.7
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 9.4e-11 70.5 45 71.1
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.2e-10 70.1 43 76.7
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.6e-10 69.7 47 74.5
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.6e-10 69.7 106 38.7
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 2.7e-10 68.9 47 76.6
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 3.6e-10 68.6 44 70.5
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 6.1e-10 67.8 43 74.4
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 6.1e-10 67.8 53 62.3
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 8.0e-10 67.4 44 77.3
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 1.0e-09 67.0 42 76.2
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.0e-09 67.0 44 72.7
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 1.0e-09 67.0 44 72.7
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 1.4e-09 66.6 37 83.8
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 3.0e-09 65.5 42 71.4
Actinidia02801 Actinidia chinensis HOM05D007456 ORTHO05D009411 6.8e-09 64.3 57 54.4
Eucgr.G03360 Eucalyptus grandis HOM05D001779 ORTHO05D001753 4.4e-08 61.6 85 38.8
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 5.7e-08 61.2 73 45.2
AT5G36300 Arabidopsis thaliana HOM05D007456 ORTHO05D009411 7.5e-08 60.8 73 41.1
Manes.05G012004 Manihot esculenta HOM05D003039 ORTHO05D009478 2.2e-07 59.3 89 36.0
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 3.7e-07 58.5 35 77.1
HPP92_008353 Vanilla planifolia HOM05D006705 ORTHO05D008179 3.7e-07 58.5 53 49.1
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 8.3e-07 57.4 85 36.5
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 8.3e-07 57.4 85 37.6
Oeu006556.1 Olea europaea HOM05D001779 ORTHO05D001753 8.3e-07 57.4 85 36.5
AL5G34050 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 1.1e-06 57.0 85 36.5
Manes.07G008000 Manihot esculenta HOM05D001779 ORTHO05D001753 1.4e-06 56.6 85 32.9
Thecc.01G407600 Theobroma cacao HOM05D001779 ORTHO05D001753 1.4e-06 56.6 86 34.9
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 1.8e-06 56.2 37 73.0
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 3.1e-06 55.5 85 36.5
SalBow6G2927 Salvia bowleyana HOM05D001779 ORTHO05D001753 3.1e-06 55.5 85 36.5
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 4.1e-06 55.1 85 36.5
Hund22619 Selenicereus undatus HOM05D001779 ORTHO05D001753 4.1e-06 55.1 97 33.0
Ciclev10020011m.g Citrus clementina HOM05D001779 ORTHO05D001753 5.4e-06 54.7 85 36.5
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 5.4e-06 54.7 84 36.9
HPP92_020723 Vanilla planifolia HOM05D007340 ORTHO05D008979 5.4e-06 54.7 82 36.6
Sopen08g013850 Solanum pennellii HOM05D001779 ORTHO05D001753 9.1e-06 53.9 84 36.9


User provided reference genes

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