Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.1e-139 500.0 265 100.0
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 5.6e-70 268.5 268 60.8
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 1.8e-68 263.5 266 60.2
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 2.6e-67 259.6 277 56.3
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 5.8e-67 258.5 264 58.3
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 7.1e-65 251.5 287 55.4
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 1.6e-64 250.4 287 55.4
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 7.8e-64 248.1 266 57.5
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 1.3e-63 247.3 264 58.3
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.3e-63 246.5 269 61.3
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.3e-63 246.5 269 61.3
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 3.0e-63 246.1 269 60.6
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 3.9e-63 245.7 265 56.6
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 5.1e-63 245.4 264 58.3
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 8.6e-63 244.6 265 58.5
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.9e-62 243.4 266 57.9
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 7.3e-62 241.5 267 61.0
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 9.5e-62 241.1 264 57.6
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 2.1e-61 240.0 264 56.4
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 2.1e-61 240.0 169 75.1
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 2.8e-61 239.6 169 74.6
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 2.8e-61 239.6 267 57.3
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 3.6e-61 239.2 169 74.6
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 4.7e-61 238.8 266 58.3
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 8.1e-61 238.0 174 75.3
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 8.1e-61 238.0 169 73.4
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 8.1e-61 238.0 263 57.4
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 1.1e-60 237.7 169 75.7
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 3.1e-60 236.1 169 74.0
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 3.1e-60 236.1 169 74.0
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 3.1e-60 236.1 267 56.6
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 8.9e-60 234.6 260 56.9
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.2e-59 234.2 266 53.8
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 2.0e-59 233.4 266 57.5
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 2.6e-59 233.0 168 72.6
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 3.4e-59 232.6 169 71.6
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 3.4e-59 232.6 268 53.7
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.7e-58 230.3 169 72.2
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 8.4e-58 228.0 161 72.7
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 1.4e-57 227.3 168 70.2
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 1.4e-57 227.3 170 70.0
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.4e-57 227.3 261 52.5
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.4e-57 227.3 267 60.7
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 1.9e-57 226.9 265 55.5
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.9e-57 226.9 169 71.6
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 1.9e-57 226.9 169 71.6
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 1.9e-57 226.9 166 74.7
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 1.9e-57 226.9 172 70.9
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 3.2e-57 226.1 164 73.2
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 4.2e-57 225.7 169 71.0
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 5.4e-57 225.3 163 73.6
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 7.1e-57 224.9 223 60.5
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 7.1e-57 224.9 171 69.6
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 9.2e-57 224.6 167 71.9
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.2e-56 224.2 162 75.9
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 2.7e-56 223.0 164 72.6
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 2.7e-56 223.0 173 71.1
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 2.7e-56 223.0 168 70.8
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 4.6e-56 222.2 179 70.4
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 6.0e-56 221.9 163 73.0
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 6.0e-56 221.9 168 70.8
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.8e-56 221.5 268 50.7
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 7.8e-56 221.5 264 56.1
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 1.3e-55 220.7 168 70.2
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 1.7e-55 220.3 168 70.2
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 1.7e-55 220.3 165 70.9
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.3e-55 219.9 247 55.1
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 3.0e-55 219.5 165 72.1
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 5.1e-55 218.8 172 68.6
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 5.1e-55 218.8 172 68.6
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 5.1e-55 218.8 262 53.8
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 1.5e-54 217.2 163 71.8
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 1.5e-54 217.2 163 71.8
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 1.5e-54 217.2 163 71.8
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 1.6e-53 213.8 261 52.9
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.6e-53 213.8 172 65.1
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 2.8e-53 213.0 162 72.2
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 3.6e-53 212.6 259 51.7
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 8.1e-53 211.5 169 67.5
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 8.1e-53 211.5 168 66.7
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 8.1e-53 211.5 162 69.1
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 2.4e-52 209.9 168 64.9
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 2.4e-52 209.9 169 65.1
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 3.1e-52 209.5 248 55.2
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 4.0e-52 209.1 169 67.5
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 1.5e-51 207.2 168 67.3
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 2.6e-51 206.5 171 67.8
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 3.4e-51 206.1 169 63.9
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 5.8e-51 205.3 175 62.9
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 9.9e-51 204.5 167 64.7
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 2.9e-50 203.0 168 66.7
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 3.2e-49 199.5 263 49.0
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 4.6e-48 195.7 154 68.8
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 1.5e-46 190.7 236 51.3
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 7.3e-46 188.3 169 61.5
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.6e-45 187.2 164 64.0
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 1.2e-43 181.0 172 60.5
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 2.1e-40 170.2 170 58.2
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 2.7e-40 169.9 237 47.3
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.5e-40 169.5 249 45.0
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 2.3e-31 140.2 239 43.1
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 2.5e-30 136.7 85 83.5
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.1e-17 94.7 129 42.6
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 3.0e-15 86.7 172 37.2
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 2.0e-14 84.0 79 57.0
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 3.3e-14 83.2 137 42.3
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 5.7e-14 82.4 129 40.3
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.2e-11 74.7 122 33.6
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 2.6e-11 73.6 121 34.7
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.0e-07 61.6 128 34.4


User provided reference genes

Program Settings