Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 3.4e-278 961.1 501 100.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 3.2e-159 565.8 504 64.7
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.1e-156 557.4 506 62.6
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.2e-153 547.4 509 65.4
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.6e-153 546.2 518 59.1
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 3.8e-152 542.3 530 59.2
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 6.5e-152 541.6 504 60.9
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 2.5e-151 539.7 510 58.6
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 7.9e-150 534.6 507 59.8
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.0e-149 534.3 509 58.7
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 6.7e-149 531.6 513 59.1
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 4.3e-148 528.9 496 60.3
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 9.7e-148 527.7 510 59.4
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 2.8e-147 526.2 525 58.9
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.1e-146 524.2 523 58.3
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.2e-145 520.8 525 57.0
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 5.0e-144 515.4 518 57.5
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.1e-143 514.2 515 59.0
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 3.2e-143 512.7 508 57.5
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.1e-142 510.0 518 58.1
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 3.6e-142 509.2 480 62.9
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.5e-140 503.1 478 62.1
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 7.4e-140 501.5 516 57.6
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 9.7e-140 501.1 527 57.3
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 4.8e-139 498.8 513 59.1
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.4e-138 497.3 367 70.8
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.5e-137 493.8 495 58.0
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.6e-137 493.0 514 56.4
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 5.9e-137 491.9 500 58.6
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.7e-136 490.3 513 55.9
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 2.2e-136 490.0 522 55.4
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 3.8e-136 489.2 547 53.4
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 4.7e-134 482.3 510 55.5
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 2.3e-133 479.9 535 53.3
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.0e-133 479.6 505 54.9
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 4.4e-132 475.7 506 54.3
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.7e-131 473.8 453 58.5
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 8.2e-131 471.5 542 51.7
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 8.2e-131 471.5 511 54.6
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.8e-130 470.3 496 55.6
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.4e-130 469.9 454 57.7
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 4.1e-130 469.2 543 51.2
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.3e-130 468.8 491 55.4
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 7.0e-130 468.4 494 55.5
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.5e-129 467.2 445 60.4
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.5e-129 466.1 466 57.9
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 4.5e-129 465.7 501 53.1
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 5.9e-129 465.3 499 55.7
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.9e-128 463.0 464 55.4
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.9e-128 463.0 496 54.4
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 3.8e-128 462.6 548 50.9
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 3.8e-128 462.6 554 50.4
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 6.5e-128 461.8 486 56.2
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 9.4e-127 458.0 491 53.4
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.6e-126 457.2 509 54.2
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.4e-125 454.1 510 51.8
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 6.7e-125 451.8 512 53.7
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 6.7e-125 451.8 333 72.7
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 8.8e-125 451.4 444 57.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.5e-124 450.7 492 53.9
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.7e-123 447.2 542 50.7
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 2.2e-123 446.8 560 49.6
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 2.4e-122 443.4 503 50.5
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.2e-121 441.0 484 52.3
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 2.6e-121 439.9 509 53.0
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 2.7e-118 429.9 436 55.0
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 3.6e-118 429.5 468 54.1
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 3.6e-118 429.5 517 51.8
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.4e-117 427.6 533 49.9
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.2e-116 424.5 501 49.9
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.3e-115 421.0 527 49.3
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.7e-115 420.6 393 57.0
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 2.8e-115 419.9 442 54.8
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.7e-115 419.5 336 66.7
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.4e-114 417.5 521 47.6
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.4e-114 416.8 353 64.3
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.4e-114 416.8 457 52.3
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.6e-113 414.1 503 48.9
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 4.5e-113 412.5 436 54.4
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-111 407.5 413 56.4
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.9e-111 407.1 491 50.1
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 4.2e-111 406.0 465 52.5
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 8.8e-109 398.3 444 54.3
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 8.8e-109 398.3 453 53.0
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 2.8e-107 393.3 496 48.0
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 7.2e-103 378.6 414 53.1
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 2.8e-102 376.7 534 44.6
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 9.8e-100 368.2 410 53.7
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.7e-99 366.3 427 52.2
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.9e-87 327.4 397 51.1
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.6e-86 324.3 511 44.8
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.7e-83 314.3 187 82.4
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-83 314.3 290 58.6
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.1e-82 311.6 419 46.5
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.9e-82 310.8 218 72.5
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.2e-81 308.1 346 56.4
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.6e-79 299.3 383 50.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.6e-78 297.7 281 57.7
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 6.8e-77 292.4 424 41.3
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 7.6e-76 288.9 386 48.4
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.4e-74 283.9 351 46.4
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 2.4e-74 283.9 320 50.3
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 3.3e-71 273.5 310 53.5
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.7e-70 269.6 287 53.3
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 2.1e-65 254.2 445 37.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.7e-64 251.1 276 50.0
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.0e-64 250.4 275 48.4
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 6.6e-64 249.2 194 62.4
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 5.6e-63 246.1 185 67.6
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.1e-62 244.2 276 47.1
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 2.0e-60 237.7 154 77.3
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 2.6e-60 237.3 276 45.3
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.4e-60 236.5 266 53.4
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-58 231.9 144 76.4
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 2.7e-57 227.3 278 45.7
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 5.6e-55 219.5 167 65.3
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 9.0e-53 212.2 278 43.9
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.5e-52 209.9 287 42.2
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 9.9e-52 208.8 168 62.5
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.7e-51 208.0 287 42.2
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.2e-51 207.6 287 41.8
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 4.9e-51 206.5 167 62.9
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 2.7e-49 200.7 275 46.5
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.7e-49 200.7 290 41.7
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 4.6e-49 199.9 280 40.7
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 7.9e-49 199.1 191 58.1
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.8e-45 188.0 164 59.8
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 3.8e-43 180.3 121 72.7
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.1e-42 178.7 181 52.5
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 9.3e-42 175.6 180 50.6
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 5.8e-36 156.4 251 36.7
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 8.4e-35 152.5 259 37.8
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.4e-35 152.5 188 49.5
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.6e-33 148.3 115 68.7
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 8.7e-32 142.5 189 42.9
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 5.7e-31 139.8 99 73.7
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 1.4e-29 135.2 142 52.8
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.0e-27 129.0 402 24.9
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.6e-25 120.2 163 44.8
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 5.7e-23 113.2 284 34.9
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 5.3e-21 106.7 175 37.1
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-20 105.5 164 39.0
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.6e-17 95.1 88 50.0
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.0e-16 92.4 183 31.7
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 2.3e-16 91.3 51 74.5
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.1e-16 90.1 63 65.1
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 4.4e-15 87.0 66 59.1
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 3.1e-13 80.9 131 42.0
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.1e-13 80.9 131 42.0
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 2.6e-12 77.8 92 53.3
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 9.4e-10 69.3 41 80.5
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 9.4e-10 69.3 185 31.9
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 6.7e-08 63.2 30 96.7
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 2.6e-07 61.2 37 78.4
SHI11060 Sapria himalayana HOM05D001353 ORTHO05D005187 3.7e-06 57.4 50 60.0


User provided reference genes

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