Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 3.1e-152 542.0 318 100.0
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 1.8e-86 323.6 321 60.7
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 4.0e-83 312.4 337 56.4
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 2.0e-82 310.1 319 58.6
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 5.1e-78 295.4 325 55.4
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 6.7e-78 295.0 318 57.5
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.9e-77 293.5 332 55.4
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.9e-77 293.5 325 55.1
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 3.3e-77 292.7 319 56.4
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.3e-77 292.4 319 56.7
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 5.7e-77 292.0 321 58.9
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 7.4e-77 291.6 321 58.9
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 9.7e-77 291.2 318 56.6
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.3e-76 290.8 319 55.5
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 3.7e-76 289.3 320 55.9
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 4.8e-76 288.9 326 56.7
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 6.3e-76 288.5 323 57.3
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 3.1e-75 286.2 319 54.5
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 4.1e-75 285.8 390 47.9
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 9.0e-75 284.6 326 56.1
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 1.5e-74 283.9 377 49.9
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.3e-73 280.8 330 52.7
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 2.2e-73 280.0 319 52.7
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 2.2e-73 280.0 316 53.5
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.1e-72 277.7 321 53.6
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 1.9e-72 276.9 326 57.1
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.5e-72 276.6 320 55.9
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.6e-71 273.9 338 54.7
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.1e-71 273.5 341 51.6
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 7.9e-71 271.6 332 53.3
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.0e-70 271.2 331 51.7
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 1.8e-70 270.4 347 53.3
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.3e-70 270.0 405 46.4
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 3.0e-70 269.6 327 56.3
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 3.9e-70 269.2 347 53.6
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 6.7e-70 268.5 337 54.6
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 8.8e-70 268.1 318 51.9
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.1e-69 267.7 319 53.0
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 1.5e-69 267.3 337 51.3
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 1.3e-68 264.2 347 50.7
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.7e-68 263.8 335 51.3
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 2.2e-68 263.5 369 47.2
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 4.8e-68 262.3 330 52.4
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.1e-67 261.2 321 53.0
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 1.1e-67 261.2 331 52.3
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 1.4e-67 260.8 331 53.2
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 5.3e-67 258.8 353 49.3
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 6.9e-67 258.5 331 53.5
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 1.2e-66 257.7 338 51.2
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 2.0e-66 256.9 327 57.5
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 7.7e-66 255.0 314 51.6
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 8.5e-65 251.5 298 53.0
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 3.2e-64 249.6 312 52.9
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 9.4e-64 248.1 351 50.7
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 7.9e-63 245.0 315 52.1
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 7.9e-63 245.0 358 49.4
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.0e-62 244.6 292 52.1
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.3e-62 243.4 337 47.5
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 3.0e-62 243.0 332 51.2
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 5.1e-62 242.3 332 48.5
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 8.8e-62 241.5 319 50.5
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.1e-61 241.1 298 50.7
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 3.3e-61 239.6 370 46.8
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 9.7e-61 238.0 300 50.3
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 7.0e-59 231.9 276 53.3
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 1.0e-57 228.0 323 48.3
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 1.3e-57 227.6 402 45.5
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.3e-57 227.6 338 45.9
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 2.9e-57 226.5 270 53.7
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 4.2e-56 222.6 319 48.3
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 2.3e-54 216.9 364 43.1
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.0e-54 216.5 262 53.4
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.9e-54 216.1 274 51.8
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.2e-52 210.3 420 44.0
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 2.8e-52 209.9 366 41.3
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.1e-51 208.0 324 47.2
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.4e-51 207.6 283 50.2
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 1.8e-51 207.2 336 52.4
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.2e-50 204.5 422 43.4
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 3.5e-50 203.0 362 45.9
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 4.5e-50 202.6 424 43.2
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 7.7e-50 201.8 323 48.9
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.9e-49 199.9 281 51.6
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 7.2e-48 195.3 283 48.8
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 4.7e-47 192.6 297 45.5
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 1.4e-46 191.0 316 43.4
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 8.8e-46 188.3 253 51.0
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 8.8e-46 188.3 253 51.0
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 8.8e-46 188.3 367 43.3
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 2.6e-45 186.8 228 50.4
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 9.7e-45 184.9 259 48.3
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 9.7e-45 184.9 255 49.8
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 9.7e-45 184.9 255 49.8
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 3.7e-44 183.0 256 50.0
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 8.3e-44 181.8 257 46.7
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.8e-43 180.6 362 43.4
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 2.4e-43 180.3 262 47.7
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 4.1e-43 179.5 263 48.3
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 6.5e-41 172.2 251 45.4
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 9.4e-40 168.3 290 41.7
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.1e-39 167.2 190 53.7
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 4.0e-38 162.9 193 57.0
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 7.0e-35 152.1 255 45.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.0e-33 148.3 226 43.8
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 8.6e-33 145.2 322 43.2
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.5e-32 142.5 131 62.6
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.6e-31 141.0 134 61.2
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.6e-31 141.0 269 43.1
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 4.7e-31 139.4 334 41.6
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 8.9e-30 135.2 146 58.2
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.9e-30 135.2 145 56.6
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.2e-29 134.8 157 56.1
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 7.8e-26 122.1 238 37.4
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 2.3e-25 120.6 125 62.4
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 5.2e-22 109.4 68 76.5
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 6.8e-22 109.0 65 78.5
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.9e-20 102.8 111 61.3
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.9e-20 102.8 111 61.3
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 6.4e-20 102.4 107 57.9
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.2e-19 100.1 67 74.6
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 3.3e-16 90.1 113 51.3
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 3.6e-15 86.7 174 37.4
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.1e-14 85.1 142 40.8
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 7.5e-13 79.0 118 42.4
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.2e-10 71.6 137 36.5
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-08 65.1 103 38.8
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-08 65.1 103 38.8
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 3.3e-08 63.5 168 34.5
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 6.8e-06 55.8 127 33.1


User provided reference genes

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