Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 2.1e-97 359.4 232 100.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.4e-85 320.1 232 78.0
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.4e-85 320.1 232 78.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.6e-84 316.6 232 78.0
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 5.9e-84 314.7 232 76.7
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.0e-83 313.9 232 81.5
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.3e-83 313.5 232 77.6
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 1.7e-83 313.2 232 80.6
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.3e-83 312.8 232 81.0
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.9e-83 312.0 232 75.9
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 5.0e-83 311.6 234 77.4
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 5.0e-83 311.6 232 76.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 8.6e-83 310.8 233 78.1
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 8.6e-83 310.8 233 78.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.5e-82 310.1 236 78.0
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.5e-82 310.1 232 75.9
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.5e-82 310.1 232 75.9
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.9e-82 309.7 232 76.3
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 2.5e-82 309.3 232 79.7
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.5e-82 309.3 234 82.5
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.3e-82 308.9 233 82.4
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.3e-82 308.9 232 78.9
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 7.3e-82 307.8 232 77.2
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 7.3e-82 307.8 246 71.1
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 7.3e-82 307.8 233 77.3
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 9.5e-82 307.4 233 77.7
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 9.5e-82 307.4 233 78.5
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 9.5e-82 307.4 236 80.5
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-81 307.0 233 79.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 1.2e-81 307.0 233 76.8
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.6e-81 306.6 233 76.8
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-81 306.6 233 76.8
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.6e-81 306.6 233 76.8
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 2.1e-81 306.2 232 81.5
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.8e-81 305.8 232 75.9
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.6e-81 305.4 232 75.0
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 4.7e-81 305.1 233 77.3
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 4.7e-81 305.1 233 77.3
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 4.7e-81 305.1 233 77.3
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.2e-81 304.7 232 75.4
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 8.0e-81 304.3 232 78.9
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 8.0e-81 304.3 232 79.3
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.4e-80 303.5 232 75.9
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.4e-80 303.5 232 78.9
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 1.8e-80 303.1 232 75.0
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 2.3e-80 302.8 233 77.3
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 2.3e-80 302.8 233 77.3
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 2.3e-80 302.8 232 75.0
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 2.3e-80 302.8 233 76.8
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 4.0e-80 302.0 231 76.6
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 6.8e-80 301.2 232 78.9
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.5e-79 300.1 232 77.6
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 2.0e-79 299.7 232 77.6
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 3.4e-79 298.9 232 74.1
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 4.4e-79 298.5 233 75.5
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 9.8e-79 297.4 232 71.1
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.7e-78 296.6 232 77.2
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.7e-78 296.6 233 76.8
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.2e-78 296.2 232 75.4
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.2e-78 296.2 232 76.7
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.9e-78 295.8 245 74.7
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 4.9e-78 295.0 233 77.7
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 6.4e-78 294.7 233 76.0
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 6.4e-78 294.7 232 78.0
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 8.3e-78 294.3 233 78.1
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 1.1e-77 293.9 233 76.4
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.9e-77 293.1 232 73.3
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.9e-77 293.1 232 78.0
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.4e-77 292.7 232 66.8
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.4e-77 291.6 235 73.6
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 7.0e-77 291.2 233 76.4
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 9.2e-77 290.8 236 76.7
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.2e-76 290.4 234 77.8
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.2e-76 290.4 232 74.1
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.6e-76 290.0 232 67.7
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 1.6e-76 290.0 235 72.3
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 2.0e-76 289.7 234 71.4
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 2.7e-76 289.3 235 76.2
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.7e-76 289.3 236 76.7
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.7e-76 289.3 235 76.2
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 4.6e-76 288.5 237 71.3
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 7.8e-76 287.7 232 71.6
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.3e-75 286.2 234 71.8
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 3.9e-75 285.4 235 73.2
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 8.6e-75 284.3 232 72.4
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.1e-74 283.9 233 73.8
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.5e-74 283.5 235 76.2
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.5e-74 283.5 232 74.1
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.5e-74 283.5 232 71.6
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.9e-74 283.1 236 75.4
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.5e-74 282.7 232 76.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 4.3e-74 282.0 233 75.5
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 5.6e-74 281.6 236 72.0
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 5.6e-74 281.6 233 76.0
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 5.6e-74 281.6 234 69.7
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 5.6e-74 281.6 234 69.7
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.6e-73 280.0 237 75.9
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 2.1e-73 279.6 232 75.9
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 2.8e-73 279.3 228 80.3
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.6e-73 278.9 238 64.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 3.6e-73 278.9 232 64.7
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 4.7e-73 278.5 239 75.7
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 8.1e-73 277.7 232 71.6
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 2.0e-71 273.1 232 73.7
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 2.6e-71 272.7 232 71.1
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.5e-71 271.2 235 64.7
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 7.5e-71 271.2 232 64.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 9.9e-71 270.8 233 64.4
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.3e-70 270.4 251 61.8
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 2.2e-70 269.6 232 76.3
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 3.7e-70 268.9 234 71.8
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 3.7e-70 268.9 234 71.8
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.4e-69 266.9 232 69.8
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 4.1e-69 265.4 233 69.5
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 9.2e-69 264.2 232 72.4
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 1.2e-68 263.8 233 72.1
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.6e-68 263.5 286 54.9
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 2.7e-68 262.7 233 70.8
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.5e-68 262.3 232 65.9
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 6.0e-68 261.5 232 68.1
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.0e-67 260.8 232 68.1
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 1.3e-67 260.4 232 69.4
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.1e-64 250.8 236 64.4
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-64 250.0 232 71.6
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 5.2e-64 248.4 233 70.4
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.9e-64 247.7 232 71.6
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-63 247.3 232 71.1
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 2.0e-63 246.5 235 66.8
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.6e-63 246.1 220 73.2
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 4.4e-63 245.4 271 60.1
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.9e-63 244.2 232 70.3
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.7e-62 243.4 232 70.7
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 4.1e-61 238.8 232 69.0
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 7.1e-61 238.0 232 69.0
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.6e-60 235.3 235 68.1
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 3.9e-59 232.3 232 62.9
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.2e-55 220.7 234 62.0
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.3e-54 217.2 155 81.3
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 7.1e-53 211.5 166 77.1
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 9.3e-53 211.1 232 60.3
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 3.5e-52 209.1 191 69.6
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.3e-50 202.2 120 83.3
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 9.6e-50 201.1 154 78.6
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.3e-46 190.7 254 51.2
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.9e-46 189.5 119 78.2
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 6.4e-46 188.3 120 77.5
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 9.3e-45 184.5 238 56.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.1e-44 183.3 188 65.4
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.7e-43 178.3 113 80.5
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.7e-43 177.9 113 80.5
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-41 174.1 113 78.8
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 5.3e-40 168.7 237 51.9
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 4.5e-39 165.6 242 50.8
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 9.9e-39 164.5 121 73.6
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.5e-34 150.6 157 70.1
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.0e-30 137.9 140 69.3
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 7.4e-26 121.7 97 67.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.3e-25 120.9 96 65.6
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 4.8e-25 119.0 93 66.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 6.5e-22 108.6 53 94.3
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.9e-21 107.1 235 41.7
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.6e-20 102.4 180 48.3
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 4.6e-20 102.4 53 88.7
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 1.8e-19 100.5 182 47.3
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.3e-19 100.1 72 77.8
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.1e-18 97.8 89 59.6
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.3e-18 96.3 229 33.6
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 2.8e-17 93.2 53 83.0
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 8.2e-17 91.7 97 57.7
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.9e-16 88.6 95 53.7
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 7.7e-15 85.1 44 88.6
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 2.5e-13 80.1 56 67.9
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 9.7e-10 68.2 92 45.7
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.8e-09 65.9 102 44.1
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 5.9e-07 58.9 76 53.9


User provided reference genes

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