Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 1.2e-32 142.5 71 100.0
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 3.1e-31 137.9 71 94.4
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 3.1e-31 137.9 71 94.4
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 4.0e-31 137.5 71 93.0
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 6.8e-31 136.7 71 95.8
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 8.9e-31 136.3 71 94.4
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 8.9e-31 136.3 71 93.0
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 1.2e-30 136.0 71 94.4
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 1.2e-30 136.0 71 93.0
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 1.2e-30 136.0 71 93.0
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 1.2e-30 136.0 71 93.0
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 2.6e-30 134.8 71 91.5
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 2.6e-30 134.8 71 93.0
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 3.4e-30 134.4 71 91.5
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 4.4e-30 134.0 71 91.5
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 4.4e-30 134.0 71 93.0
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 4.4e-30 134.0 71 93.0
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 4.4e-30 134.0 71 93.0
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 4.4e-30 134.0 71 93.0
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 4.4e-30 134.0 71 93.0
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 4.4e-30 134.0 71 93.0
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 5.8e-30 133.7 71 91.5
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 7.5e-30 133.3 71 88.7
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 7.5e-30 133.3 71 91.5
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 7.5e-30 133.3 71 91.5
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 7.5e-30 133.3 71 90.1
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 9.8e-30 132.9 71 90.1
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 1.3e-29 132.5 71 90.1
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 1.3e-29 132.5 71 90.1
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 1.3e-29 132.5 71 88.7
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-29 132.5 71 88.7
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-29 132.5 71 88.7
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-29 132.5 71 88.7
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-29 132.5 71 88.7
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.3e-29 132.5 71 90.1
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 1.7e-29 132.1 71 90.1
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 1.7e-29 132.1 71 88.7
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 2.2e-29 131.7 71 88.7
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 2.2e-29 131.7 71 88.7
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 2.9e-29 131.3 71 85.9
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 2.9e-29 131.3 71 88.7
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 2.9e-29 131.3 71 87.3
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 2.9e-29 131.3 71 88.7
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 4.9e-29 130.6 71 87.3
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 4.9e-29 130.6 71 87.3
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 4.9e-29 130.6 71 87.3
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 4.9e-29 130.6 71 87.3
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 6.4e-29 130.2 71 88.7
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 6.4e-29 130.2 71 88.7
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 1.1e-28 129.4 71 87.3
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.1e-28 129.4 71 87.3
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.1e-28 129.4 71 87.3
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 1.1e-28 129.4 71 87.3
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 1.1e-28 129.4 71 87.3
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 1.4e-28 129.0 71 90.1
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 1.4e-28 129.0 71 90.1
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 1.4e-28 129.0 71 85.9
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 1.9e-28 128.6 71 88.7
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.9e-28 128.6 71 85.9
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 5.4e-28 127.1 71 85.9
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 5.4e-28 127.1 71 87.3
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 7.0e-28 126.7 67 91.0
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 7.0e-28 126.7 67 91.0
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 7.0e-28 126.7 71 88.7
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 9.2e-28 126.3 71 84.5
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 1.2e-27 125.9 71 84.5
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 1.2e-27 125.9 71 84.5
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 1.2e-27 125.9 71 83.1
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 1.2e-27 125.9 68 88.2
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 1.6e-27 125.6 71 85.9
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 1.6e-27 125.6 71 85.9
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 1.6e-27 125.6 71 84.5
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 1.6e-27 125.6 71 85.9
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 2.7e-27 124.8 71 83.1
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 2.7e-27 124.8 71 84.5
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 2.7e-27 124.8 71 87.3
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 3.5e-27 124.4 71 85.9
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 3.5e-27 124.4 71 85.9
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 4.6e-27 124.0 71 84.5
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 4.6e-27 124.0 67 88.1
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 83.1
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 80.3
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 7.8e-27 123.2 71 81.7
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 7.8e-27 123.2 71 81.7
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 1.0e-26 122.9 71 84.5
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 1.3e-26 122.5 71 84.5
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.7e-26 122.1 71 83.1
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 2.3e-26 121.7 71 81.7
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 2.3e-26 121.7 71 83.1
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 3.0e-26 121.3 71 83.1
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 3.0e-26 121.3 71 83.1
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 3.9e-26 120.9 71 83.1
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 5.0e-26 120.6 71 81.7
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 5.0e-26 120.6 71 83.1
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 6.6e-26 120.2 68 83.8
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 6.6e-26 120.2 71 81.7
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 6.6e-26 120.2 73 80.8
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 6.6e-26 120.2 71 81.7
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 1.1e-25 119.4 71 81.7
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 1.5e-25 119.0 71 84.5
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 1.5e-25 119.0 71 84.5
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 1.5e-25 119.0 71 77.5
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 1.5e-25 119.0 68 82.4
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 71 80.3
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 80.9
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 71 81.7
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 1.9e-25 118.6 71 81.7
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 71 81.7
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 2.5e-25 118.2 71 80.3
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 3.3e-25 117.9 71 80.3
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 4.3e-25 117.5 67 86.6
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 4.3e-25 117.5 71 80.3
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 5.6e-25 117.1 71 80.3
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 5.6e-25 117.1 71 80.3
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 5.6e-25 117.1 71 80.3
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 5.6e-25 117.1 71 80.3
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 7.3e-25 116.7 71 80.3
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 7.3e-25 116.7 71 78.9
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 7.3e-25 116.7 71 80.3
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 7.3e-25 116.7 71 78.9
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 7.3e-25 116.7 71 80.3
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 9.5e-25 116.3 71 78.9
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 9.5e-25 116.3 71 80.3
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 1.6e-24 115.5 71 78.9
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 1.6e-24 115.5 71 78.9
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 1.6e-24 115.5 71 74.6
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 1.6e-24 115.5 71 78.9
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 2.1e-24 115.2 71 80.3
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 2.1e-24 115.2 71 80.3
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 2.1e-24 115.2 71 80.3
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 2.1e-24 115.2 71 77.5
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.6e-24 114.4 70 77.1
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 3.6e-24 114.4 71 78.9
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 78.9
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 78.9
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 78.9
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 78.9
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 78.9
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 76.1
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 2.3e-23 111.7 71 76.1
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 2.3e-23 111.7 71 76.1
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 1.5e-22 109.0 71 74.6
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 2.0e-22 108.6 98 57.1
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 2.6e-22 108.2 67 77.6
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 1.7e-21 105.5 71 70.4
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 2.2e-21 105.1 73 72.6
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 4.9e-21 104.0 67 76.1
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 1.1e-20 102.8 67 73.1
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 2.4e-20 101.7 67 73.1
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 4.6e-19 97.4 53 84.9
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 9.5e-17 89.7 49 87.8
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 1.2e-16 89.4 49 81.6
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 1.6e-16 89.0 49 85.7
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea HOM05D001534 ORTHO05D004495 3.6e-16 87.8 68 69.1
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 8.1e-16 86.7 72 55.6
Nn5g26968 Nelumbo nucifera HOM05D001534 ORTHO05D004495 4.0e-15 84.3 71 64.8
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 6.8e-15 83.6 49 83.7
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 6.8e-15 83.6 72 54.2
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 1.5e-14 82.4 72 54.2
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 2.2e-13 78.6 49 77.6
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 6.4e-13 77.0 49 75.5
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 6.4e-13 77.0 71 54.9
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.4e-12 75.9 58 63.8
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 2.4e-12 75.1 72 51.4
CsaV3_1G040420 Cucumis sativus L. HOM05D001534 ORTHO05D004495 3.2e-12 74.7 38 89.5
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 1.2e-11 72.8 39 84.6
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.0e-10 69.7 37 86.5
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 1.3e-10 69.3 72 51.4
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 3.9e-10 67.8 40 77.5
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 3.9e-10 67.8 40 77.5
SGA_v2.0_scaffold478G52224 Striga asiatica HOM05D001534 ORTHO05D004495 8.6e-10 66.6 35 85.7
Lalb_Chr20g0115821 Lupinus albus HOM05D001534 ORTHO05D004495 4.3e-09 64.3 39 76.9
Sabra16G0237300 Salix brachista HOM05D001534 ORTHO05D004495 4.3e-09 64.3 34 85.3
vmacro09683 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 1.6e-08 62.4 37 86.5
Aa31LG3G11260 Aethionema arabicum HOM05D001534 ORTHO05D004495 2.1e-08 62.0 34 79.4
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 2.8e-08 61.6 71 40.8
Nitab4.5_0001049g0020 Nicotiana tabacum HOM05D001534 ORTHO05D004495 8.9e-07 56.6 33 78.8


User provided reference genes

Program Settings