Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 0.0e+00 1186.0 654 100.0
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.0e-253 880.2 668 72.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.8e-247 859.4 665 75.0
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 4.2e-244 848.2 663 74.2
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.0e-242 843.6 662 74.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.0e-242 843.6 663 73.9
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 6.7e-242 840.9 663 74.1
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 8.8e-242 840.5 663 74.1
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 7.4e-241 837.4 663 74.1
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.3e-240 836.6 663 74.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 3.7e-240 835.1 663 73.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 4.1e-239 831.6 663 72.1
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 7.0e-239 830.9 662 73.1
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 9.1e-239 830.5 663 73.2
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.2e-238 830.1 665 72.8
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.6e-238 829.7 663 73.5
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.7e-237 826.2 667 70.3
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.2e-237 825.9 665 72.5
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 2.9e-237 825.5 668 73.1
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 3.8e-237 825.1 663 73.6
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.5e-237 823.9 664 73.2
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.1e-236 823.5 664 73.0
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 4.2e-236 821.6 665 71.6
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 9.4e-236 820.5 664 72.1
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 2.1e-235 819.3 663 72.9
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 4.0e-234 815.1 665 72.2
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 3.3e-233 812.0 664 72.3
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 7.5e-233 810.8 661 71.7
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.4e-231 805.8 665 69.5
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.1e-231 805.4 667 70.8
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.0e-230 802.7 662 70.5
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 6.5e-229 797.7 666 69.1
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.5e-228 796.6 665 71.0
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-228 796.2 662 70.1
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.9e-228 796.2 665 69.9
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.2e-228 795.0 662 69.9
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.8e-226 789.6 662 69.6
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 5.2e-226 788.1 660 70.6
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.6e-225 785.8 661 67.8
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.3e-224 783.5 664 70.2
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 2.8e-224 782.3 663 70.6
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 2.8e-224 782.3 663 70.6
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 4.8e-224 781.6 662 69.9
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-223 780.0 662 69.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 3.8e-221 771.9 663 70.4
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 9.5e-220 767.3 664 66.7
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 3.6e-219 765.4 661 68.4
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.4e-218 763.5 661 66.4
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 8.8e-218 760.8 661 69.6
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.5e-217 760.0 665 66.9
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 9.8e-217 757.3 641 68.5
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.6e-214 750.0 660 66.2
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 6.1e-211 738.0 662 66.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.3e-210 736.1 660 67.0
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.0e-209 733.0 666 64.7
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 2.2e-208 729.6 676 66.7
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.1e-207 727.2 660 66.2
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.1e-207 727.2 660 65.9
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 7.0e-207 724.5 658 66.0
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 2.7e-206 722.6 668 63.8
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 2.1e-203 713.0 665 63.0
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 6.2e-203 711.4 662 62.8
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 5.2e-202 708.4 656 63.0
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.2e-201 707.2 661 64.1
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.2e-201 707.2 662 63.6
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.9e-200 701.8 675 65.6
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.6e-198 696.8 658 62.5
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.7e-198 696.0 663 63.5
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.7e-198 696.0 675 65.0
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 3.5e-198 695.7 659 64.8
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.0e-197 694.1 664 62.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-197 693.7 669 62.8
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.3e-197 693.7 666 62.5
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 3.9e-197 692.2 659 62.7
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 6.6e-197 691.4 663 62.7
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 8.6e-197 691.0 659 64.3
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.9e-196 689.9 663 61.8
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.9e-196 689.9 658 62.5
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.9e-196 689.9 663 61.8
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.9e-196 689.9 663 63.5
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.5e-196 687.6 661 63.1
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.2e-195 687.2 615 65.2
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 6.2e-195 684.9 658 61.4
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 4.0e-194 682.2 658 61.1
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 8.9e-194 681.0 660 61.5
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 1.2e-193 680.6 660 61.4
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 3.4e-193 679.1 660 63.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.7e-192 676.8 666 62.8
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 3.7e-192 675.6 664 61.9
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.9e-192 675.2 617 66.1
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 4.9e-192 675.2 666 60.4
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 6.4e-192 674.9 668 61.5
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 6.4e-192 674.9 658 61.1
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.9e-191 673.3 676 59.6
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.3e-189 666.4 662 59.5
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 3.0e-189 666.0 539 70.7
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.1e-188 664.1 666 60.1
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.5e-188 662.9 548 70.3
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.5e-188 662.9 548 70.3
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 4.3e-188 662.1 663 60.0
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.6e-188 661.8 666 58.9
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 7.3e-188 661.4 663 60.0
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.5e-188 661.0 666 59.2
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.6e-187 660.2 663 58.7
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 2.8e-187 659.4 664 60.1
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.7e-187 658.7 669 61.1
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.2e-187 658.3 666 58.9
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 3.4e-185 652.5 661 63.1
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 9.9e-185 651.0 668 59.7
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 6.4e-184 648.3 665 57.0
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 6.4e-184 648.3 658 60.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.1e-183 647.5 674 57.7
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.4e-183 646.4 667 59.1
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 7.1e-183 644.8 663 61.4
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.3e-181 640.6 657 58.3
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 3.3e-180 636.0 658 59.4
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-179 632.9 659 56.9
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.4e-178 630.6 663 60.0
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.8e-178 630.2 661 58.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 4.0e-178 629.0 662 58.6
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.2e-177 627.5 686 59.2
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.2e-177 627.5 662 58.8
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.4e-176 621.3 657 58.6
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 2.7e-174 616.3 655 56.9
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 4.6e-174 615.5 659 58.7
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.9e-173 612.5 662 56.0
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.1e-172 610.9 660 56.1
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.1e-170 604.4 672 54.8
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 2.6e-169 599.7 672 54.8
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 3.8e-168 595.9 656 58.4
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.4e-167 594.0 678 54.1
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 7.1e-167 591.7 660 55.5
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.7e-166 589.7 653 57.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.3e-165 587.4 661 55.8
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 3.0e-157 559.7 686 51.5
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 3.9e-157 559.3 686 53.2
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.7e-157 558.5 639 57.3
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.6e-156 554.7 682 54.3
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 4.8e-155 552.4 685 53.1
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 2.4e-154 550.1 665 52.3
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.1e-154 549.7 665 52.9
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.0e-152 544.7 657 53.9
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 6.5e-152 542.0 626 54.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 7.1e-151 538.5 662 52.0
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.0e-141 508.1 680 50.0
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.9e-140 503.8 546 56.0
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 2.5e-135 486.9 660 50.9
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 3.4e-129 466.5 634 48.4
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 4.7e-126 456.1 403 67.7
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 8.0e-126 455.3 402 68.7
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 4.1e-122 443.0 665 44.7
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 5.0e-120 436.0 676 45.9
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 2.5e-119 433.7 425 62.6
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 7.5e-116 422.2 406 65.3
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 5.9e-113 412.5 663 46.0
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.8e-94 350.5 672 41.2
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.3e-85 320.9 310 60.0
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.3e-85 320.9 560 42.7
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 2.0e-84 317.8 544 42.8
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.3e-79 300.4 234 70.9
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.9e-72 276.9 433 44.6
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.1e-65 254.6 654 38.1
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.9e-58 231.5 645 35.2
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.1e-53 215.7 273 46.5
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.9e-41 172.9 224 54.9
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.1e-31 142.5 113 63.7
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.4e-29 135.6 157 54.1
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 7.7e-28 129.8 109 56.9
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 7.7e-28 129.8 77 83.1
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 6.1e-25 120.2 126 61.9
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.1e-23 115.9 89 65.2
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.6e-20 104.8 61 80.3
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.3e-19 102.4 134 41.0
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.5e-18 98.2 78 69.2
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.0e-16 92.8 74 62.2
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 2.3e-16 91.7 597 23.8
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.0e-11 76.3 61 63.9
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 3.6e-09 67.8 104 51.0
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 3.3e-07 61.2 402 23.4
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 9.7e-07 59.7 78 48.7


User provided reference genes

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