Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 5.5e-259 897.1 453 100.0
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.5e-256 888.3 455 98.9
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 2.0e-229 798.9 451 87.1
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 2.5e-219 765.4 454 83.0
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 2.1e-218 762.3 451 82.5
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 2.3e-217 758.8 451 82.7
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 4.0e-217 758.1 466 79.8
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 1.3e-215 753.1 451 81.2
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 3.7e-215 751.5 451 81.6
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 4.9e-215 751.1 454 80.0
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 4.9e-215 751.1 454 80.0
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 1.8e-214 749.2 451 81.2
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 3.1e-214 748.4 453 80.6
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 4.1e-214 748.0 453 79.9
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 3.5e-213 745.0 455 81.5
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 2.9e-212 741.9 453 80.1
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 8.6e-212 740.3 453 79.7
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 1.5e-211 739.6 454 79.5
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 2.5e-211 738.8 450 81.1
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 7.3e-211 737.3 454 80.4
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.2e-210 736.5 457 80.3
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 3.6e-210 734.9 453 80.4
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.4e-209 733.0 466 78.8
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 1.8e-209 732.6 453 79.5
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 2.3e-209 732.3 453 79.9
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 2.3e-209 732.3 453 78.4
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 3.0e-209 731.9 456 81.1
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.0e-208 729.2 453 79.2
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 4.4e-208 728.0 452 78.1
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 7.5e-208 727.2 450 78.7
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 7.5e-208 727.2 451 77.8
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 1.7e-207 726.1 451 78.7
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 6.4e-207 724.2 453 78.6
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 8.3e-207 723.8 459 78.2
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 1.4e-206 723.0 453 78.1
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 1.4e-206 723.0 451 78.3
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 1.8e-206 722.6 453 78.1
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 1.8e-206 722.6 453 79.0
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 1.8e-206 722.6 487 73.9
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 4.1e-206 721.5 451 77.2
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 7.0e-206 720.7 451 78.3
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 1.6e-205 719.5 444 78.6
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 4.6e-205 718.0 451 76.7
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 5.9e-205 717.6 454 78.6
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 7.8e-205 717.2 451 76.9
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 1.3e-204 716.5 452 77.2
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 1.7e-204 716.1 451 76.3
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 3.0e-204 715.3 452 77.0
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 3.0e-204 715.3 451 76.7
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 3.9e-204 714.9 452 78.1
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 5.0e-204 714.5 452 77.9
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.5e-203 713.0 484 75.2
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 1.9e-203 712.6 454 77.3
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 1.9e-203 712.6 452 76.5
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 7.3e-203 710.7 475 74.5
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 9.5e-203 710.3 448 77.7
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 2.8e-202 708.8 456 75.7
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 6.2e-202 707.6 455 76.7
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 1.8e-201 706.1 451 75.8
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 3.1e-201 705.3 451 75.4
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 5.2e-201 704.5 451 75.8
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 5.8e-200 701.0 458 75.5
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.2e-199 699.1 481 74.2
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 2.4e-198 695.7 451 74.5
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 3.3e-195 685.3 469 71.2
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 2.3e-193 679.1 451 72.3
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 1.5e-192 676.4 488 70.5
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 3.4e-192 675.2 461 73.3
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 4.9e-191 671.4 414 80.2
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 1.2e-189 666.8 454 73.3
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 1.6e-189 666.4 473 71.7
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.0e-188 663.7 442 75.6
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 5.6e-187 657.9 467 70.9
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.2e-186 656.8 451 70.1
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.6e-186 656.4 448 73.4
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.0e-184 649.4 407 78.1
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.6e-184 649.0 460 72.2
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 2.6e-184 649.0 451 71.6
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 6.0e-181 637.9 481 66.9
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 7.6e-176 620.9 457 70.2
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 7.6e-176 620.9 451 70.1
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 4.2e-174 615.1 494 65.2
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 9.3e-174 614.0 384 78.9
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 2.7e-173 612.5 451 69.0
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 8.7e-172 607.4 514 62.3
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 1.1e-171 607.1 399 74.4
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.5e-171 606.7 514 62.8
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 3.3e-171 605.5 555 58.7
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 4.5e-168 595.1 452 67.0
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 1.6e-165 586.6 403 72.2
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.8e-164 583.2 494 63.0
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 5.1e-164 581.6 448 66.7
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 5.8e-160 568.2 355 80.3
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.4e-158 563.5 337 81.6
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 9.0e-153 544.3 485 59.2
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.1e-150 537.3 432 63.4
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 3.2e-150 535.8 325 80.6
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 2.5e-147 526.2 455 55.8
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 1.9e-139 500.0 455 53.4
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 3.0e-132 476.1 416 59.9
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 1.5e-131 473.8 296 79.1
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 2.9e-127 459.5 296 76.4
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 3.0e-124 449.5 505 50.1
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.9e-120 435.3 340 67.9
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 3.8e-119 432.6 455 47.9
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 4.5e-112 409.1 446 46.4
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 4.2e-110 402.5 268 75.0
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 4.4e-107 392.5 446 43.7
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 2.9e-103 379.8 433 50.3
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.0e-103 379.0 276 69.6
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.0e-99 367.1 226 81.4
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 6.4e-90 335.5 205 79.0
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 1.2e-80 304.7 258 62.8
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 1.9e-73 280.8 238 63.0
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 3.9e-71 273.1 283 53.7
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 2.4e-68 263.8 174 74.1
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.0e-67 260.8 185 69.7
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 5.4e-65 252.7 457 34.4
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 6.6e-63 245.7 226 52.7
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 9.0e-60 235.3 148 75.0
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 3.2e-57 226.9 325 44.6
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 9.3e-57 225.3 451 31.0
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.0e-55 221.9 520 30.2
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.4e-52 211.5 556 27.0
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.0e-51 207.6 130 76.9
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.3e-38 163.3 97 75.3
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.9e-34 149.8 109 64.2
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.9e-34 149.8 109 64.2
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 5.5e-33 146.4 111 69.4
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.5e-30 138.3 118 60.2
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.0e-28 129.0 96 62.5
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.9e-25 121.3 70 87.1
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 6.1e-24 116.3 69 84.1
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 7.9e-24 115.9 69 84.1
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 9.7e-22 109.0 58 84.5
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.1e-20 104.0 64 76.6
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 3.1e-20 104.0 184 38.6
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 7.7e-19 99.4 81 59.3
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 2.5e-17 94.4 58 75.9
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.1e-15 86.7 52 78.8
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 7.4e-14 82.8 51 80.4
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 2.4e-12 77.8 55 67.3
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.4e-12 77.8 58 58.6
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 1.7e-10 71.6 105 41.0
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 5.0e-10 70.1 72 52.8
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.0e-07 62.4 38 76.3
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 1.5e-06 58.5 39 71.8
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.4e-06 56.2 36 77.8


User provided reference genes

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