Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-102 376.3 187 100.0
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.9e-40 169.9 205 56.1
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-30 137.1 89 84.3
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 6.8e-30 134.8 89 82.0
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.6e-29 132.9 89 79.8
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.6e-29 132.9 89 79.8
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.6e-29 132.9 89 79.8
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 4.4e-29 132.1 89 78.7
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 4.4e-29 132.1 89 78.7
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 4.4e-29 132.1 89 78.7
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.4e-29 132.1 86 82.6
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 4.4e-29 132.1 89 78.7
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 5.8e-29 131.7 89 78.7
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.8e-29 131.7 89 78.7
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 5.8e-29 131.7 89 78.7
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 5.8e-29 131.7 89 78.7
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 7.5e-29 131.3 89 77.5
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 9.8e-29 131.0 85 82.4
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 9.8e-29 131.0 89 77.5
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.3e-28 130.6 89 77.5
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.7e-28 130.2 89 77.5
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.7e-28 130.2 88 78.4
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.7e-28 130.2 88 78.4
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 2.2e-28 129.8 89 76.4
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 2.2e-28 129.8 89 77.5
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 2.9e-28 129.4 89 77.5
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 3.7e-28 129.0 89 76.4
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.9e-28 128.6 87 77.0
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.9e-28 128.6 89 76.4
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.9e-28 128.6 89 76.4
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 4.9e-28 128.6 89 76.4
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 6.4e-28 128.3 89 75.3
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 6.4e-28 128.3 89 77.5
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 6.4e-28 128.3 89 75.3
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 6.4e-28 128.3 89 75.3
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 6.4e-28 128.3 89 75.3
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.3e-28 127.9 88 76.1
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 8.3e-28 127.9 89 75.3
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-27 127.5 86 81.4
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 1.1e-27 127.5 89 75.3
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.1e-27 127.5 89 74.2
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.4e-27 127.1 89 75.3
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.4e-27 127.1 89 76.4
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.4e-27 127.1 89 74.2
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.9e-27 126.7 89 76.4
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 1.9e-27 126.7 89 75.3
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.9e-27 126.7 89 75.3
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.9e-27 126.7 80 81.2
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.9e-27 126.7 89 75.3
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 2.4e-27 126.3 89 74.2
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.4e-27 126.3 85 77.6
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 2.4e-27 126.3 89 75.3
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.4e-27 126.3 89 75.3
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.2e-27 125.9 89 75.3
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 5.4e-27 125.2 89 74.2
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 5.4e-27 125.2 89 73.0
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 5.4e-27 125.2 89 75.3
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 7.0e-27 124.8 80 80.0
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 7.0e-27 124.8 78 80.8
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 7.0e-27 124.8 89 71.9
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 9.2e-27 124.4 89 74.2
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 1.6e-26 123.6 88 75.0
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.0e-26 123.2 89 74.2
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 6.0e-26 121.7 89 73.0
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.3e-25 120.6 89 71.9
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.3e-25 120.6 84 75.0
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.3e-25 120.6 91 72.5
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 2.3e-25 119.8 93 68.8
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 2.3e-25 119.8 89 70.8
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 2.3e-25 119.8 91 70.3
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 2.3e-25 119.8 85 74.1
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 2.3e-25 119.8 91 70.3
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 2.3e-25 119.8 85 74.1
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.0e-25 119.4 89 70.8
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 3.0e-25 119.4 91 71.4
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 3.0e-25 119.4 91 71.4
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 3.0e-25 119.4 85 74.1
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 3.9e-25 119.0 89 70.8
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.9e-25 119.0 91 71.4
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 3.9e-25 119.0 85 74.1
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 3.9e-25 119.0 89 70.8
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 3.9e-25 119.0 91 71.4
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 5.0e-25 118.6 89 70.8
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 5.0e-25 118.6 91 69.2
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 5.0e-25 118.6 91 69.2
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 6.6e-25 118.2 89 69.7
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 6.6e-25 118.2 85 74.1
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.5e-24 117.1 91 68.1
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 1.5e-24 117.1 89 69.7
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 2.5e-24 116.3 89 65.2
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 3.3e-24 115.9 85 71.8
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 3.3e-24 115.9 85 71.8
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 3.3e-24 115.9 85 71.8
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 5.6e-24 115.2 85 72.9
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 7.3e-24 114.8 85 70.6
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 7.3e-24 114.8 85 71.8
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 9.5e-24 114.4 88 69.3
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.6e-23 113.6 88 67.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.6e-23 113.6 73 82.2
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.6e-23 112.5 94 67.0
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.2e-23 111.7 70 85.7
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 8.1e-23 111.3 88 65.9
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.4e-22 110.5 85 69.4
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.1e-22 109.4 85 65.9
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.8e-22 108.2 88 63.6
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.2e-21 107.5 111 53.2
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.5e-21 107.1 123 52.0
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 3.4e-21 105.9 88 63.6
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 3.4e-21 105.9 89 59.6
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.4e-21 105.5 123 51.2
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 9.8e-21 104.4 142 46.5
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.7e-20 103.6 82 68.3
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 2.2e-20 103.2 72 73.6
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 7.1e-19 98.2 131 51.9
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 2.1e-18 96.7 89 55.1
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 6.0e-18 95.1 76 67.1
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 7.8e-18 94.7 157 40.8
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 7.8e-18 94.7 79 63.3
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 7.1e-11 71.6 46 73.9
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.2e-11 71.2 47 78.7
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.7e-10 69.7 45 73.3
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 3.9e-09 65.9 44 75.0
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.6e-09 65.1 41 80.5
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 8.6e-09 64.7 41 75.6
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.1e-08 64.3 44 68.2
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.5e-08 63.9 42 76.2
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.9e-08 63.5 41 75.6
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 2.5e-08 63.2 35 91.4
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 2.5e-08 63.2 43 72.1
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.6e-08 62.0 41 75.6
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 9.6e-08 61.2 42 71.4
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.2e-07 60.8 58 58.6
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 2.1e-07 60.1 44 68.2
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 2.1e-07 60.1 44 68.2
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-07 59.7 44 68.2
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 6.2e-07 58.5 49 59.2
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.8e-06 55.1 38 73.7


User provided reference genes

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