Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.2e-65 253.1 132 100.0
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 5.3e-61 237.7 130 94.6
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 2.5e-55 218.8 130 81.5
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 7.4e-55 217.2 130 81.5
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 9.6e-55 216.9 130 83.8
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.3e-54 216.5 130 83.8
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.3e-54 216.5 130 81.5
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.8e-54 215.3 130 83.1
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 3.7e-54 214.9 131 80.2
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.7e-54 214.9 131 80.2
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.7e-54 214.9 131 80.2
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 3.7e-54 214.9 130 81.5
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 4.8e-54 214.5 130 82.3
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 4.8e-54 214.5 131 79.4
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 6.2e-54 214.2 130 82.3
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 6.2e-54 214.2 130 80.8
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 8.1e-54 213.8 130 81.5
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.1e-53 213.4 130 82.3
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.8e-53 212.6 131 79.4
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 3.1e-53 211.8 131 82.4
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 3.1e-53 211.8 130 80.0
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 4.0e-53 211.5 130 80.8
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 5.3e-53 211.1 130 80.0
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 9.0e-53 210.3 130 82.3
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 9.0e-53 210.3 130 80.8
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 9.0e-53 210.3 130 77.7
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 9.0e-53 210.3 130 82.3
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 9.0e-53 210.3 130 82.3
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 9.0e-53 210.3 130 80.8
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.2e-52 209.9 130 81.5
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 2.0e-52 209.1 141 77.3
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 2.0e-52 209.1 130 81.5
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.0e-52 209.1 130 80.0
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 4.5e-52 208.0 130 80.0
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 4.5e-52 208.0 130 80.0
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 5.8e-52 207.6 130 76.9
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 5.8e-52 207.6 130 80.8
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 5.8e-52 207.6 130 80.8
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 7.6e-52 207.2 130 79.2
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 7.6e-52 207.2 130 80.0
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 7.6e-52 207.2 130 80.8
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 9.9e-52 206.8 130 76.2
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.3e-51 206.5 130 78.5
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.3e-51 206.5 130 79.2
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 2.2e-51 205.7 130 80.0
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 2.2e-51 205.7 130 76.9
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 2.9e-51 205.3 130 79.2
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 2.9e-51 205.3 130 78.5
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 3.8e-51 204.9 130 76.9
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 3.8e-51 204.9 130 76.9
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 3.8e-51 204.9 130 80.0
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 3.8e-51 204.9 130 81.5
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 3.8e-51 204.9 130 80.8
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 3.8e-51 204.9 130 80.8
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 4.9e-51 204.5 130 76.9
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 4.9e-51 204.5 131 79.4
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 6.4e-51 204.1 130 78.5
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 8.4e-51 203.8 130 76.9
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 8.4e-51 203.8 130 76.9
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 8.4e-51 203.8 130 79.2
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 8.4e-51 203.8 130 79.2
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.4e-50 203.0 129 78.3
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 1.4e-50 203.0 130 76.2
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 1.4e-50 203.0 130 76.2
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 1.9e-50 202.6 130 77.7
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.9e-50 202.6 130 80.8
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.9e-50 202.6 125 82.4
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.4e-50 202.2 130 76.9
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.4e-50 202.2 130 79.2
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.4e-50 202.2 130 76.9
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 2.4e-50 202.2 130 76.9
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 3.2e-50 201.8 130 76.9
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 3.2e-50 201.8 131 77.1
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.2e-50 201.8 130 78.5
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.2e-50 201.8 130 78.5
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 4.2e-50 201.4 130 76.2
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 4.2e-50 201.4 130 76.2
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 7.1e-50 200.7 130 76.2
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 9.3e-50 200.3 130 77.7
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 9.3e-50 200.3 130 76.2
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.3e-50 200.3 131 75.6
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 1.2e-49 199.9 130 74.6
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.1e-49 199.1 130 76.9
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 2.1e-49 199.1 128 76.6
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 3.5e-49 198.4 131 74.8
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.5e-49 198.4 130 76.2
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 3.5e-49 198.4 130 73.8
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 3.5e-49 198.4 129 77.5
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 3.5e-49 198.4 130 75.4
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.0e-49 197.6 131 74.0
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 6.0e-49 197.6 130 76.2
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 7.9e-49 197.2 131 74.8
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 7.9e-49 197.2 131 74.8
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 7.9e-49 197.2 132 75.8
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 7.9e-49 197.2 130 76.2
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.0e-48 196.8 130 76.2
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 1.3e-48 196.4 126 78.6
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 1.3e-48 196.4 130 74.6
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 3.0e-48 195.3 130 74.6
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 3.9e-48 194.9 131 75.6
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 3.9e-48 194.9 125 77.6
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 3.9e-48 194.9 130 73.8
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 5.1e-48 194.5 131 74.0
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 6.7e-48 194.1 131 76.3
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 6.7e-48 194.1 130 74.6
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.1e-47 193.4 131 74.8
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.1e-47 193.4 130 74.6
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 1.9e-47 192.6 131 72.5
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 3.3e-47 191.8 130 74.6
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 5.6e-47 191.0 131 73.3
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 7.4e-47 190.7 130 73.1
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 7.4e-47 190.7 130 73.8
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 7.4e-47 190.7 130 73.1
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 9.6e-47 190.3 131 74.8
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.6e-47 190.3 150 67.3
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.1e-46 189.1 130 74.6
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 3.7e-46 188.3 130 73.1
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 4.8e-46 188.0 131 73.3
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 6.2e-46 187.6 131 74.0
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 8.2e-46 187.2 130 73.1
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.4e-45 185.7 131 70.2
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 3.1e-45 185.3 130 72.3
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 3.1e-45 185.3 131 71.8
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 9.0e-45 183.7 130 73.1
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 3.4e-44 181.8 130 70.8
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 1.4e-42 176.4 130 70.8
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.7e-41 172.2 131 66.4
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.7e-41 172.2 144 63.9
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 9.7e-39 163.7 140 62.9
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.8e-38 161.4 134 64.2
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 5.3e-37 157.9 131 59.5
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 3.4e-36 155.2 123 65.9
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 4.5e-36 154.8 102 74.5
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.3e-30 136.7 130 57.7
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 1.7e-30 136.3 132 50.0
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.3e-27 126.7 75 82.7
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.7e-27 126.3 127 50.4
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.7e-25 119.0 91 62.6
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 5.1e-24 114.8 82 72.0
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 1.1e-23 113.6 84 65.5
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 2.0e-20 102.8 132 45.5
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 8.5e-19 97.4 57 84.2
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 1.8e-16 89.7 131 42.7
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 6.3e-14 81.3 57 68.4
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 1.2e-07 60.5 39 74.4


User provided reference genes

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