Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.1e-171 606.7 334 100.0
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 9.0e-134 480.7 308 80.5
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 9.0e-134 480.7 306 79.4
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 5.5e-131 471.5 309 77.3
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 7.2e-131 471.1 313 76.7
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 7.2e-131 471.1 308 77.6
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 6.7e-129 464.5 312 77.2
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.1e-128 463.8 317 76.0
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.9e-128 463.0 316 74.7
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 5.7e-128 461.5 317 75.1
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 7.4e-128 461.1 314 76.4
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 9.7e-128 460.7 311 75.6
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.2e-127 459.5 317 74.4
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.2e-127 459.5 308 76.6
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.7e-127 458.8 317 74.8
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 8.2e-127 457.6 311 74.9
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 5.3e-126 454.9 317 74.1
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 9.0e-126 454.1 316 74.4
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.2e-125 453.8 316 73.7
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.2e-125 453.8 290 78.3
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.0e-125 453.0 317 74.1
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 3.4e-125 452.2 319 73.7
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.9e-125 451.4 314 74.8
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 5.9e-125 451.4 318 73.9
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.0e-124 450.7 314 73.9
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 1.3e-124 450.3 310 74.8
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 3.2e-123 445.7 310 74.5
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.2e-123 445.3 289 78.2
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 4.2e-123 445.3 310 74.2
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 3.6e-122 442.2 292 75.3
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 7.9e-122 441.0 315 72.4
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.8e-121 439.9 308 74.4
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.8e-121 439.9 315 73.0
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.8e-121 439.9 316 70.9
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 3.0e-121 439.1 315 73.3
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 5.1e-121 438.3 334 70.7
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 6.7e-121 438.0 303 74.6
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 1.1e-120 437.2 316 71.8
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 1.5e-120 436.8 307 72.3
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.0e-120 436.4 307 74.3
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.5e-120 436.0 315 71.7
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 2.5e-120 436.0 316 71.2
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 4.3e-120 435.3 302 74.8
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 7.4e-120 434.5 315 70.2
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 7.4e-120 434.5 316 70.9
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 9.7e-120 434.1 315 70.2
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 9.7e-120 434.1 315 70.2
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 9.7e-120 434.1 315 70.2
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 9.7e-120 434.1 315 71.7
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 1.3e-119 433.7 316 71.5
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 1.7e-119 433.3 308 74.7
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 2.2e-119 433.0 335 69.9
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 2.8e-119 432.6 313 70.9
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 3.7e-119 432.2 316 69.9
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.8e-119 431.8 315 69.8
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.4e-118 430.3 304 73.7
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.4e-118 430.3 294 75.2
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.4e-118 430.3 316 71.8
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 1.4e-118 430.3 315 70.8
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.8e-118 429.9 310 73.9
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.1e-118 429.1 314 70.1
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 5.3e-118 428.3 314 72.9
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.2e-117 427.2 316 69.6
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.5e-117 426.8 317 72.2
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 5.9e-117 424.9 315 71.1
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 2.2e-116 422.9 316 69.0
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 2.9e-116 422.5 311 71.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 2.9e-116 422.5 309 70.6
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.9e-116 422.5 290 72.4
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.8e-116 422.2 300 71.3
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 6.5e-116 421.4 291 72.2
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 8.5e-116 421.0 316 69.9
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.1e-115 420.6 354 65.0
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.4e-115 420.2 288 72.2
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.9e-115 419.9 316 69.6
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 2.1e-114 416.4 342 66.7
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.6e-114 415.6 287 72.1
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 3.6e-114 415.6 315 67.9
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 4.7e-114 415.2 315 68.6
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 4.7e-114 415.2 319 69.0
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 4.7e-114 415.2 307 69.7
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 7.9e-114 414.5 316 69.0
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.4e-113 413.7 317 67.2
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 3.0e-113 412.5 313 68.7
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 3.9e-113 412.1 307 68.7
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 6.7e-113 411.4 307 69.4
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 8.8e-113 411.0 310 71.3
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 1.5e-112 410.2 400 59.8
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 7.4e-112 407.9 311 71.4
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-111 407.1 308 68.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.3e-111 407.1 308 68.5
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 2.2e-111 406.4 314 66.6
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 3.7e-111 405.6 314 66.9
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 4.8e-111 405.2 308 68.2
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 4.8e-111 405.2 314 67.8
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 6.3e-111 404.8 316 67.1
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 6.3e-111 404.8 318 66.7
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.1e-110 404.1 305 69.2
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.1e-110 402.1 292 67.8
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.6e-109 400.2 310 71.0
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-109 399.8 315 66.0
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 3.5e-109 399.1 308 67.2
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 3.5e-109 399.1 308 67.2
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 4.5e-109 398.7 301 70.1
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.2e-108 396.4 315 65.7
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.9e-108 396.0 310 65.8
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.0e-108 395.2 302 65.9
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.5e-108 394.4 256 75.8
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.9e-107 393.3 315 65.4
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.9e-107 393.3 313 67.1
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 3.2e-107 392.5 315 65.4
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 4.2e-107 392.1 315 65.1
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.2e-106 390.6 309 67.6
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 3.6e-106 389.0 316 65.8
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 6.1e-106 388.3 308 66.6
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 6.1e-106 388.3 396 55.3
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 6.1e-106 388.3 327 67.0
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 8.8e-105 384.4 320 64.1
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 4.4e-104 382.1 286 71.3
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-103 379.8 326 62.6
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 2.2e-103 379.8 305 67.2
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 4.1e-102 375.6 299 64.5
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 7.0e-102 374.8 338 62.4
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 2.5e-99 366.3 318 62.9
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-98 364.0 315 65.1
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.0e-98 361.3 376 56.1
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 1.2e-93 347.4 319 56.7
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 2.2e-92 343.2 333 59.2
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 9.4e-91 337.8 308 62.0
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.0e-85 320.1 314 55.4
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 2.9e-84 316.2 300 58.0
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 3.4e-80 302.8 313 55.0
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 4.4e-80 302.4 318 55.3
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.7e-79 300.4 308 56.2
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 8.3e-79 298.1 315 53.0
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 5.6e-75 285.4 248 59.3
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 8.0e-74 281.6 313 53.7
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 6.4e-71 271.9 270 56.3
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.0e-68 263.1 177 73.4
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.9e-67 260.4 296 52.0
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 4.7e-66 255.8 320 49.4
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 6.4e-63 245.4 219 63.5
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.4e-62 244.2 167 73.1
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 7.1e-62 241.9 255 56.1
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 3.1e-57 226.5 236 55.9
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 5.8e-56 222.2 149 69.8
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.7e-50 202.6 137 75.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.3e-47 194.5 175 64.6
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.1e-46 191.4 175 62.9
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.8e-42 176.0 186 54.8
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.1e-41 174.9 305 39.3
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.6e-37 161.0 158 62.7
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 5.6e-35 152.5 317 36.9
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-32 144.8 137 62.0
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.4e-30 137.1 104 72.1
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.6e-26 124.4 309 32.7
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-24 117.9 81 65.4
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 7.6e-24 115.5 73 69.9
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.8e-20 104.4 79 62.0
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.9e-20 103.2 99 59.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.7e-18 96.7 80 62.5
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.4e-14 84.7 61 73.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 8.7e-12 75.5 43 76.7
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 3.3e-11 73.6 52 67.3
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 5.7e-11 72.8 52 65.4
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.5e-07 58.9 105 42.9
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 2.5e-06 57.4 79 46.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.2e-06 56.6 38 76.3


User provided reference genes

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