Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.0e-204 717.6 780 100.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 5.4e-97 359.8 209 89.5
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 5.4e-97 359.8 207 93.2
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 7.1e-97 359.4 209 88.5
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 7.1e-97 359.4 209 88.5
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.5e-96 357.1 209 89.0
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 3.5e-96 357.1 208 88.5
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 6.0e-96 356.3 209 89.0
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 6.0e-96 356.3 207 89.4
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.3e-95 355.1 209 89.5
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.3e-95 355.1 209 89.0
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.7e-95 354.8 209 88.5
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.3e-95 354.4 209 89.0
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 3.0e-95 354.0 208 87.0
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 3.0e-95 354.0 302 81.1
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 3.9e-95 353.6 301 76.4
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 3.9e-95 353.6 208 87.0
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 5.1e-95 353.2 209 88.5
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 6.6e-95 352.8 209 88.0
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.5e-94 350.9 209 87.6
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 5.6e-94 349.7 209 88.5
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 5.6e-94 349.7 218 86.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 5.6e-94 349.7 207 87.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 5.6e-94 349.7 206 88.3
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 7.3e-94 349.4 299 81.6
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 1.3e-93 348.6 209 86.1
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.6e-93 348.2 209 87.6
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.1e-93 347.8 210 87.1
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 2.1e-93 347.8 209 86.6
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 2.8e-93 347.4 209 86.1
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 2.8e-93 347.4 209 86.6
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 6.2e-93 346.3 209 87.1
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.1e-92 345.5 209 86.6
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 1.1e-92 345.5 209 86.1
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.8e-92 344.7 208 85.1
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.8e-92 344.7 209 86.1
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.4e-92 344.4 204 88.7
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.3e-92 343.2 209 87.1
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 5.3e-92 343.2 212 84.4
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 5.3e-92 343.2 200 90.5
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 6.9e-92 342.8 209 85.2
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.9e-92 342.8 209 85.2
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.9e-92 342.8 209 85.2
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 6.9e-92 342.8 207 84.5
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.0e-92 342.4 209 85.2
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.0e-92 342.4 209 85.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.2e-91 342.0 209 85.2
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.5e-91 341.7 209 85.2
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.5e-91 341.7 209 85.2
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.6e-91 340.9 209 84.7
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 2.6e-91 340.9 209 84.2
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.6e-91 340.9 209 83.7
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.4e-91 340.5 282 79.1
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.4e-91 340.5 282 79.1
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 3.4e-91 340.5 209 84.7
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 5.8e-91 339.7 209 83.7
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 5.8e-91 339.7 209 83.7
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-90 338.6 209 84.2
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.7e-90 338.2 209 84.2
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.7e-90 338.2 208 83.7
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 6.4e-90 336.3 206 84.5
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 6.4e-90 336.3 210 83.8
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 8.4e-90 335.9 208 83.2
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.1e-89 335.5 300 74.3
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.1e-89 335.5 356 70.5
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.9e-89 334.7 303 76.9
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.2e-89 334.0 210 84.8
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 3.2e-89 334.0 209 85.2
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 4.2e-89 333.6 210 83.3
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 5.4e-89 333.2 209 83.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 2.1e-88 331.3 208 81.2
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 3.5e-88 330.5 210 82.9
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 3.5e-88 330.5 210 82.9
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 4.6e-88 330.1 210 82.9
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 4.6e-88 330.1 209 81.8
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.0e-87 328.9 208 80.8
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.3e-87 328.6 209 82.3
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.7e-87 328.2 209 82.3
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 2.3e-87 327.8 310 75.2
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.3e-86 323.9 196 86.7
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 5.6e-86 323.2 209 80.4
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.3e-85 322.0 248 73.0
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 4.8e-85 320.1 202 83.2
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 8.1e-85 319.3 195 84.1
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.3e-84 316.6 209 77.5
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 9.9e-83 312.4 209 78.5
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.7e-82 311.6 209 78.0
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 3.8e-82 310.5 210 76.7
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.2e-80 305.4 209 73.7
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 4.6e-80 303.5 206 76.7
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 7.9e-80 302.8 189 84.1
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 1.8e-79 301.6 178 88.2
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 1.4e-76 292.0 178 85.4
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 3.1e-76 290.8 178 83.7
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.7e-74 285.0 178 82.6
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.7e-74 285.0 209 69.9
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.9e-73 281.6 225 70.2
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 2.8e-69 267.7 198 68.7
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 8.2e-69 266.2 189 71.4
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 5.3e-68 263.5 198 71.7
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 9.0e-68 262.7 205 65.9
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 8.4e-66 256.1 195 66.2
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 6.1e-64 250.0 154 87.0
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.3e-63 248.8 188 72.3
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.0e-59 235.0 171 74.3
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 5.9e-59 233.4 145 84.8
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 6.9e-52 209.9 191 59.7
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.0e-42 179.5 156 58.3
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 3.8e-34 151.0 94 81.9
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 6.1e-32 143.7 115 60.9
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.2e-29 135.2 103 73.8
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 5.4e-28 130.6 189 42.3
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.2e-26 125.2 79 78.5
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.5e-25 122.5 72 91.7
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 2.3e-23 115.2 210 35.7
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 2.3e-23 115.2 75 78.7
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 8.8e-23 113.2 64 89.1
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 7.5e-22 110.2 63 82.5
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 9.1e-20 103.2 63 81.0
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 1.5e-17 95.9 56 83.9
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.9e-17 95.5 180 36.7
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 7.2e-17 93.6 107 47.7
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.6e-16 92.4 55 80.0
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 1.0e-15 89.7 63 73.0
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-15 88.6 168 35.7
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 5.2e-15 87.4 138 35.5
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 5.2e-15 87.4 138 35.5
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 1.2e-14 86.3 63 69.8
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.7e-13 82.4 52 76.9
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.8e-12 79.0 159 35.8
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 9.5e-09 66.6 56 66.1
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 4.7e-08 64.3 35 85.7
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.8e-07 62.4 39 74.4


User provided reference genes

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