Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.2e-239 831.2 396 100.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 4.0e-221 771.2 396 92.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 8.4e-179 630.6 388 75.5
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 4.0e-165 585.1 387 68.5
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 8.4e-163 577.4 386 68.4
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.9e-162 576.2 388 67.8
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.2e-162 575.5 387 68.0
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 4.2e-162 575.1 387 68.7
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 4.2e-162 575.1 387 68.7
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 2.7e-161 572.4 388 67.3
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.5e-161 572.0 389 66.8
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.9e-161 570.9 390 68.5
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 2.3e-160 569.3 395 66.6
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.1e-159 567.0 388 66.2
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.5e-159 566.6 389 67.9
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.5e-159 565.8 389 67.6
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.6e-158 563.1 391 65.7
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 4.8e-158 561.6 388 67.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 6.2e-158 561.2 389 67.4
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.8e-157 559.7 388 66.2
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 2.4e-157 559.3 388 66.0
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 5.8e-156 554.7 388 66.2
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 9.9e-156 553.9 389 67.1
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.9e-155 552.4 389 65.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 6.4e-155 551.2 397 65.5
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.4e-154 550.1 389 64.5
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.4e-154 549.3 388 66.5
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 5.5e-154 548.1 387 65.1
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.5e-154 548.1 378 67.7
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 5.5e-154 548.1 389 64.3
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.2e-153 547.0 388 66.5
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.2e-153 547.0 388 64.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.1e-153 546.2 389 64.0
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 2.1e-153 546.2 387 64.9
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 3.5e-153 545.4 388 64.4
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 3.0e-152 542.3 388 64.4
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 3.9e-152 542.0 390 64.4
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.7e-152 540.8 388 64.2
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.5e-151 539.3 388 64.2
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 3.3e-151 538.9 389 64.3
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.3e-151 538.9 388 63.4
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.6e-151 538.1 388 63.9
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 5.6e-151 538.1 390 64.9
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.4e-149 533.5 390 63.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 6.9e-149 531.2 398 62.8
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.5e-148 530.0 398 63.1
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.6e-148 529.3 398 61.8
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.3e-147 526.9 390 62.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.7e-147 526.6 397 62.0
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 2.2e-147 526.2 397 62.0
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.9e-147 525.8 397 62.0
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 2.9e-147 525.8 396 62.4
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 2.9e-147 525.8 387 62.5
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 4.9e-147 525.0 397 61.7
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 4.9e-147 525.0 397 61.7
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 4.9e-147 525.0 391 61.9
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.1e-146 523.9 396 61.6
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.5e-146 522.7 389 61.2
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 4.2e-146 521.9 389 59.6
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 5.5e-146 521.5 390 62.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.3e-146 520.8 396 61.1
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.1e-145 519.6 390 62.1
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 3.5e-145 518.8 392 62.0
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.6e-145 518.5 387 62.5
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 7.9e-145 517.7 400 60.8
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 2.3e-144 516.2 388 60.8
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.3e-144 516.2 395 61.0
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.3e-144 516.2 389 61.2
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.3e-144 516.2 389 60.4
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 5.1e-144 515.0 390 61.5
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 8.7e-144 514.2 398 59.8
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.9e-143 513.1 387 61.0
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 4.3e-143 511.9 389 59.6
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.3e-142 510.4 399 60.9
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.7e-142 508.8 396 61.9
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.1e-141 507.3 388 60.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.8e-141 506.5 389 58.6
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 2.4e-141 506.1 378 60.6
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 2.4e-141 506.1 388 60.6
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 4.1e-141 505.4 384 59.4
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 6.9e-141 504.6 392 60.7
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 6.9e-141 504.6 389 61.4
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 9.0e-141 504.2 387 60.2
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 9.0e-141 504.2 395 58.2
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.2e-140 503.8 397 61.7
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 2.6e-140 502.7 388 59.5
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 3.4e-140 502.3 391 60.4
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 3.4e-140 502.3 377 62.3
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 5.9e-140 501.5 388 58.8
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.0e-139 500.7 388 59.8
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.3e-139 500.4 387 59.7
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.5e-139 497.7 383 59.8
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.5e-139 497.7 383 59.8
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.9e-138 496.5 380 60.5
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 4.2e-138 495.4 386 57.5
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.1e-137 493.0 391 60.4
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.6e-137 492.3 390 59.2
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 4.6e-137 491.9 401 59.9
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 7.9e-137 491.1 388 55.9
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 3.0e-136 489.2 390 56.2
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 3.0e-136 489.2 396 59.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 8.8e-136 487.6 390 55.9
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 8.8e-136 487.6 412 57.3
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 8.8e-136 487.6 391 57.0
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.1e-135 487.3 397 57.4
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.4e-135 484.6 377 59.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.4e-135 484.6 377 59.9
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 9.7e-135 484.2 404 57.7
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 9.7e-135 484.2 387 58.1
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 9.7e-135 484.2 388 55.7
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.2e-134 483.0 384 57.8
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-132 476.9 396 57.8
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.4e-130 470.3 404 57.4
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 4.2e-130 468.8 384 54.9
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.1e-129 464.9 385 56.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-128 463.0 384 57.6
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.0e-127 459.9 388 55.2
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-119 434.1 391 53.5
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.3e-118 428.3 405 53.3
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.1e-113 413.3 395 51.4
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.0e-112 409.1 397 51.4
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 4.0e-112 409.1 406 51.0
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.3e-110 404.1 400 49.0
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.7e-110 403.7 398 52.3
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.2e-108 397.5 395 50.1
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.5e-108 396.0 398 51.3
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.5e-107 391.7 373 52.5
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 9.4e-106 387.9 394 50.8
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 2.6e-103 379.8 392 47.4
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.6e-103 379.8 395 47.3
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.5e-95 354.0 397 49.1
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 5.9e-92 342.0 379 46.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 3.9e-91 339.3 395 43.0
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.9e-88 328.2 388 46.4
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.0e-80 302.8 302 49.3
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 4.0e-80 302.8 256 55.9
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 4.7e-73 279.3 388 41.5
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.5e-71 274.2 391 42.5
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.4e-71 272.7 394 40.4
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.2e-70 270.4 385 41.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 9.2e-69 265.0 386 40.4
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 6.6e-67 258.8 222 57.2
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.3e-62 244.6 186 59.7
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.3e-59 234.6 428 34.3
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.3e-57 228.0 156 61.5
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 3.8e-38 163.3 147 52.4
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.4e-34 149.1 387 27.4
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-30 138.3 106 60.4
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-29 134.8 112 60.7
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.1e-24 118.6 78 69.2
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 9.0e-24 115.5 319 25.7
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 5.9e-15 86.3 407 24.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.5e-10 71.6 40 82.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 2.2e-09 67.8 47 59.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.0e-08 62.8 229 25.3
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 1.0e-06 58.9 59 49.2
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 2.9e-06 57.4 69 52.2


User provided reference genes

Program Settings