Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 0.0e+00 1747.6 953 100.0
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 3.9e-299 1031.6 957 59.2
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 7.9e-292 1007.3 960 58.8
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 4.3e-290 1001.5 958 59.4
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 2.8e-289 998.8 958 57.5
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.8e-288 996.1 965 58.2
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 3.1e-288 995.3 961 58.3
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 6.9e-288 994.2 961 59.2
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 2.9e-286 988.8 960 57.4
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.1e-285 986.9 960 57.5
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 3.2e-285 985.3 959 57.1
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 7.2e-285 984.2 969 57.3
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.9e-283 978.4 964 57.3
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 6.7e-283 977.6 966 57.5
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.5e-282 976.5 957 57.3
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 6.3e-281 971.1 969 57.0
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.1e-280 970.3 970 56.1
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.6e-279 965.7 971 55.9
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 2.2e-278 962.6 972 56.5
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.2e-276 956.8 1040 54.7
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.2e-273 946.0 971 56.6
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.6e-271 939.9 964 55.9
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.6e-271 939.1 965 55.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.1e-269 933.7 964 56.2
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-269 932.9 966 56.2
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 4.7e-268 928.3 961 54.7
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 5.3e-264 914.8 822 62.9
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.2e-263 913.7 965 53.9
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.5e-263 912.1 1015 56.1
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.3e-262 910.2 946 54.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 3.8e-262 908.7 1014 55.8
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.8e-262 908.7 1015 55.8
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-261 906.4 859 59.1
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.6e-258 896.0 1015 55.5
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 2.8e-257 892.5 970 54.3
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.0e-255 886.3 1006 50.7
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.5e-255 885.2 1039 54.6
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.1e-253 880.6 958 53.0
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.9e-253 879.8 957 53.1
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 5.2e-251 871.7 960 52.6
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 8.8e-251 870.9 822 60.9
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.8e-249 865.9 975 52.5
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 7.0e-248 861.3 935 53.5
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-247 860.5 958 52.6
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.5e-245 853.6 857 56.7
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-244 850.5 960 50.8
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.0e-243 847.4 960 50.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.5e-242 843.6 910 54.6
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 4.9e-241 838.6 961 50.8
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.5e-237 826.2 965 51.2
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.8e-235 820.1 966 50.0
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 2.2e-233 813.1 974 49.6
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 2.1e-228 796.6 962 49.6
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 6.2e-228 795.0 780 56.7
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 6.8e-227 791.6 987 49.3
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 9.8e-226 787.7 945 50.2
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.3e-225 787.3 945 50.3
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.1e-224 784.3 1013 47.9
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 7.1e-224 781.6 964 49.1
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.6e-223 780.4 966 48.7
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 5.6e-221 771.9 928 50.9
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 9.5e-221 771.2 1000 47.2
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 3.1e-219 766.1 1101 44.5
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.5e-218 763.8 967 47.9
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.5e-218 763.8 1002 47.6
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 7.6e-218 761.5 836 53.1
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.7e-215 753.1 965 48.0
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.0e-214 751.1 1002 45.6
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 4.3e-213 745.7 984 46.6
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 2.8e-212 743.0 961 47.3
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 4.7e-212 742.3 958 47.1
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 6.9e-211 738.4 978 45.6
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.5e-210 737.3 1005 46.4
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 2.9e-209 733.0 783 53.5
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.5e-205 720.7 804 52.9
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.2e-201 706.8 1037 44.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.6e-196 690.6 949 43.9
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.8e-196 689.9 1015 44.7
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 7.6e-194 681.8 1008 43.9
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.3e-193 681.0 947 45.5
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 8.4e-193 678.3 967 44.0
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 4.3e-189 666.0 942 44.1
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 4.3e-189 666.0 967 42.3
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.8e-187 660.6 567 64.2
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-186 657.5 957 43.9
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 3.8e-185 652.9 955 44.9
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.4e-185 651.7 917 44.3
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.9e-184 650.6 950 43.2
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 1.6e-183 647.5 956 43.8
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.3e-182 644.4 950 44.0
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.9e-182 642.9 1051 40.8
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.5e-181 641.0 955 43.0
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 6.9e-179 632.1 953 41.8
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 3.4e-178 629.8 957 43.1
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.3e-177 627.9 957 43.1
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 3.8e-177 626.3 957 43.1
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 3.8e-177 626.3 957 43.1
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 5.0e-177 625.9 957 43.1
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.1e-176 624.8 949 43.3
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 1.4e-176 624.4 956 43.7
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 2.5e-176 623.6 961 43.5
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.0e-174 618.2 607 57.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 3.9e-174 616.3 958 41.3
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 8.7e-174 615.1 953 41.9
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 4.8e-172 609.4 593 56.5
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 6.9e-171 605.5 631 55.2
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.0e-170 604.0 984 41.1
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.4e-163 581.3 803 46.3
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 5.2e-158 562.8 670 50.4
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.3e-153 548.1 999 38.1
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.4e-144 515.4 602 50.8
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 4.5e-138 496.5 792 41.3
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.3e-136 490.3 958 36.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.8e-134 484.6 947 37.0
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.5e-133 481.5 487 54.8
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 7.0e-131 472.6 795 40.3
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 4.5e-130 469.9 774 41.5
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 7.8e-130 469.2 1027 35.2
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.1e-128 465.3 383 65.3
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 9.5e-128 462.2 549 49.7
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 4.7e-127 459.9 818 39.0
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 5.2e-126 456.4 762 40.8
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.7e-124 451.4 531 49.0
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.2e-119 435.3 815 38.0
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.2e-117 428.7 1017 33.4
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 4.4e-117 426.8 542 47.8
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 6.0e-114 416.4 551 46.5
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.5e-112 411.8 1010 31.9
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 5.2e-110 403.3 416 56.7
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 3.7e-108 397.1 742 39.2
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.3e-100 372.1 335 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.6e-96 355.9 1075 29.1
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 4.9e-92 343.6 1054 29.8
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.2e-84 318.2 288 58.3
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.9e-84 317.8 271 63.8
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 4.9e-84 317.0 629 36.7
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 5.8e-77 293.5 263 60.1
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 2.1e-66 258.5 417 40.3
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.6e-63 248.8 642 30.2
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 2.2e-63 248.4 342 45.3
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.8e-63 248.1 240 56.2
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 8.2e-63 246.5 475 36.4
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.6e-58 230.7 186 64.0
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 2.0e-56 225.3 364 40.7
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 2.5e-56 224.9 401 38.9
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.4e-51 209.1 377 38.5
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.4e-46 192.6 348 38.2
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-45 189.5 229 48.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 3.9e-41 174.5 567 30.7
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.6e-40 171.8 270 44.1
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.6e-40 171.8 303 37.6
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.3e-39 167.2 185 53.5
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.4e-38 166.0 196 50.0
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.8e-36 157.9 147 53.1
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 9.7e-32 143.3 226 44.2
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 5.3e-30 137.5 133 57.1
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.6e-29 136.0 191 44.0
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.3e-28 132.9 218 42.2
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 3.0e-25 121.7 100 64.0
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 4.0e-25 121.3 92 69.6
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 6.8e-25 120.6 169 44.4
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 4.8e-23 114.4 175 40.0
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-18 99.8 139 42.4
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 2.8e-18 98.6 147 42.9
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 4.7e-18 97.8 160 38.1
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.8e-17 95.9 85 52.9
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 2.3e-17 95.5 83 62.7
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.8e-17 94.0 281 28.8
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.2e-15 89.0 153 33.3
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.9e-15 87.8 116 42.2
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.4e-14 86.3 98 43.9
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 5.4e-14 84.3 96 45.8
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.3e-12 79.7 185 30.3
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.1e-10 72.4 72 48.6
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 3.1e-09 68.6 123 37.4
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 4.0e-09 68.2 103 39.8
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 2.0e-08 65.9 122 36.1
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 1.3e-07 63.2 101 37.6
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.9e-07 62.0 180 33.9
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 6.4e-07 60.8 86 31.4


User provided reference genes

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