Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.9e-159 565.8 291 100.0
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.1e-159 564.7 291 99.7
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.9e-144 515.4 292 89.0
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 6.4e-144 514.2 322 82.3
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.9e-143 512.7 292 88.4
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.6e-142 509.6 292 87.3
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.7e-141 506.1 292 86.6
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.3e-141 505.8 292 87.0
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 5.1e-141 504.6 291 86.3
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.1e-139 499.2 292 85.6
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 6.2e-139 497.7 293 86.3
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.1e-138 496.9 292 84.9
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.4e-138 496.5 292 86.0
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.4e-138 495.7 292 85.3
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.3e-138 494.6 294 85.4
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 6.9e-138 494.2 292 85.6
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.2e-137 493.4 290 85.5
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.5e-137 493.0 292 85.6
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.5e-137 493.0 292 84.6
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 7.6e-137 490.7 290 85.2
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 9.9e-137 490.3 292 83.9
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.7e-136 489.6 291 85.2
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 2.9e-136 488.8 292 83.6
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.9e-135 486.1 292 82.5
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 2.4e-135 485.7 293 84.0
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 3.2e-135 485.3 290 84.1
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 4.2e-135 485.0 292 84.2
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 2.1e-134 482.6 292 84.6
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.5e-134 481.9 291 81.8
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.8e-133 479.6 291 81.8
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.3e-133 479.2 290 84.1
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 3.9e-133 478.4 290 82.1
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 8.7e-133 477.2 292 83.2
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 8.7e-133 477.2 291 83.5
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.1e-132 476.9 292 82.2
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.5e-132 476.5 291 81.1
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.5e-132 476.5 280 86.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.5e-132 476.5 290 81.7
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-132 475.7 294 80.6
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 4.3e-132 474.9 321 78.2
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 4.3e-132 474.9 305 78.7
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 4.3e-132 474.9 294 82.0
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 5.6e-132 474.6 290 80.7
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.6e-131 473.0 291 80.8
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.6e-131 473.0 291 82.5
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 2.8e-131 472.2 291 83.5
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 4.8e-131 471.5 272 86.8
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 6.2e-131 471.1 291 80.4
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 8.1e-131 470.7 326 74.5
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.8e-130 469.5 291 83.2
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.4e-130 469.2 293 81.6
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 5.3e-130 468.0 291 79.7
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.2e-129 466.8 292 80.5
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.0e-129 466.1 292 80.5
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.0e-129 466.1 292 80.1
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 5.8e-129 464.5 293 80.2
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 9.9e-129 463.8 290 80.3
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 6.4e-128 461.1 291 78.4
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.9e-127 459.5 291 79.7
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 3.2e-127 458.8 292 80.1
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 4.2e-127 458.4 297 78.1
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 2.1e-126 456.1 292 79.5
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.1e-126 456.1 292 78.4
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.3e-125 452.6 291 74.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.0e-125 452.2 292 79.1
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.5e-124 449.9 294 78.6
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.9e-124 449.5 291 79.0
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 2.5e-124 449.1 291 76.6
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 7.4e-124 447.6 268 82.1
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 3.7e-123 445.3 290 76.9
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 8.2e-123 444.1 292 77.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.1e-122 442.2 290 75.9
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 4.0e-122 441.8 292 77.1
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 9.0e-122 440.7 292 74.0
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.2e-121 440.3 295 77.3
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.5e-121 439.9 324 71.6
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.0e-121 439.5 290 75.9
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 3.4e-121 438.7 292 76.0
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 3.4e-121 438.7 294 74.5
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 7.6e-121 437.6 292 78.1
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 8.4e-120 434.1 293 76.8
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.1e-119 433.7 291 72.5
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.9e-119 433.0 290 76.9
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 3.2e-119 432.2 292 76.0
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.1e-119 431.0 310 71.6
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.1e-119 431.0 308 71.8
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 9.3e-119 430.6 291 76.3
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 9.3e-119 430.6 291 76.3
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.5e-118 428.7 285 76.5
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 4.6e-118 428.3 293 73.7
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.2e-115 419.5 385 62.3
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.7e-115 418.7 237 87.8
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 6.3e-115 417.9 291 72.9
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 6.3e-115 417.9 291 72.9
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 6.9e-114 414.5 289 73.0
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.4e-113 412.1 292 74.7
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 3.4e-113 412.1 290 73.4
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 7.7e-113 411.0 291 73.2
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.2e-112 409.5 290 73.1
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 2.9e-112 409.1 293 72.4
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.9e-112 409.1 293 72.4
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 3.8e-112 408.7 291 73.2
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 5.0e-112 408.3 291 73.2
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 8.5e-112 407.5 292 72.6
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 8.5e-112 407.5 292 72.3
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-111 406.8 291 71.1
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 3.6e-110 402.1 298 69.8
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 6.7e-109 397.9 228 86.8
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 8.8e-109 397.5 292 68.2
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.5e-108 396.7 291 71.5
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 3.3e-108 395.6 291 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 3.7e-107 392.1 293 68.9
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 5.3e-106 388.3 297 68.4
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 5.9e-105 384.8 291 68.0
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.0e-101 372.5 290 67.6
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.8e-99 365.9 297 66.0
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 6.3e-99 364.8 228 78.1
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 8.2e-99 364.4 292 69.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 2.0e-97 359.8 191 91.6
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 2.0e-97 359.8 292 64.4
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 3.5e-97 359.0 238 76.5
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 1.3e-96 357.1 259 72.6
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.4e-95 353.6 292 65.4
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.0e-93 347.4 208 84.6
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 4.4e-92 342.0 271 66.8
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.9e-87 326.6 288 60.1
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 8.8e-85 317.8 285 58.6
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.4e-77 293.9 187 77.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.7e-75 287.0 191 71.7
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 2.2e-75 286.6 298 51.7
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 6.3e-75 285.0 297 53.2
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 7.0e-74 281.6 196 73.0
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 8.3e-67 258.1 293 50.2
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.1e-66 257.7 289 52.9
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.4e-58 230.7 294 49.3
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.4e-58 230.7 294 49.3
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.4e-58 230.7 294 49.3
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.6e-52 209.9 262 49.6
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 9.5e-47 191.4 105 88.6
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 3.4e-44 183.0 108 82.4
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 2.4e-42 176.8 150 61.3
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.2e-41 174.5 227 47.1
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.6e-39 164.9 154 59.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.8e-38 163.3 154 58.4
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.8e-38 163.3 154 58.4
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 8.4e-35 151.8 84 89.3
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 7.8e-33 145.2 188 41.5
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.5e-31 141.0 106 64.2
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 9.6e-31 138.3 92 78.3
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 3.8e-27 126.3 73 80.8
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 3.8e-27 126.3 73 80.8
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.4e-26 124.4 72 80.6
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.5e-23 114.4 95 66.3
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 7.3e-23 112.1 68 77.9
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.4e-21 107.8 187 40.6
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.9e-19 99.4 60 75.0
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.9e-18 97.4 128 44.5
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 9.6e-15 85.1 59 67.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 4.8e-14 82.8 254 29.9
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.4e-13 80.5 58 70.7
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 3.1e-13 80.1 86 54.7
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 8.2e-06 55.5 44 59.1


User provided reference genes

Program Settings