Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 2454.1 1318 100.0
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 2230.7 1278 93.8
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1885.9 1354 78.4
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1503.8 1358 61.6
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1500.3 1367 60.9
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1499.2 1360 61.1
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1495.7 1360 59.5
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1494.9 1364 60.6
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1466.4 1372 59.5
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1465.7 1364 59.4
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1462.6 1358 59.1
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1442.2 1363 59.3
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1440.2 1358 57.7
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1439.5 1358 57.7
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1438.3 1362 58.2
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1432.5 1360 58.3
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1423.7 1325 58.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1419.1 1372 57.2
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1409.4 1361 58.0
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1409.0 1364 57.8
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1407.9 1373 57.2
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1406.3 1361 58.0
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1403.7 1362 56.7
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1398.6 1362 56.6
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1396.7 1366 58.7
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1393.6 1366 57.2
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1393.6 1374 57.0
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1390.9 1371 56.1
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1385.5 1358 56.4
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1382.9 1134 70.6
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1381.3 1365 56.3
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1379.8 1322 57.6
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1379.4 1362 56.8
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1374.4 1399 56.1
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1368.2 1338 58.2
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1367.1 1361 56.9
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1365.1 1346 56.5
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1365.1 1365 55.5
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1363.2 1362 55.4
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1356.7 1394 56.2
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1349.7 1402 55.6
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1349.3 1366 55.1
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1340.1 1351 55.5
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1337.8 1353 55.1
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1334.7 1351 55.4
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1330.5 1367 54.4
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1329.3 1355 55.8
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1328.5 1380 54.4
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1323.9 1368 56.3
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1317.0 1320 57.4
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1315.4 1371 53.9
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1315.4 1360 53.8
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1311.6 1360 54.2
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1306.6 1358 55.5
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1305.0 1351 55.4
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1300.0 1327 56.1
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1299.3 1367 53.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1296.2 1318 55.8
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1295.8 1318 55.5
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1293.9 1367 53.5
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1291.9 1318 56.1
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1290.8 1322 55.4
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1289.6 1365 53.7
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1288.9 1367 53.3
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1288.5 1324 56.3
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1287.3 1356 55.0
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1287.3 1362 55.0
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1285.4 1316 55.9
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1283.5 1327 55.7
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1279.2 1332 54.0
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1277.3 1371 53.5
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1273.8 1319 55.6
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1270.8 1317 55.4
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1270.0 1321 55.2
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1268.4 1353 52.6
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1266.5 1318 54.8
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1265.4 1398 54.1
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1262.3 1179 57.8
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1243.0 1392 52.4
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1241.5 1333 53.9
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1227.2 1367 51.8
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1224.5 1236 56.3
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1223.0 1218 56.9
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1220.3 1354 51.4
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1211.4 1360 51.7
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1209.9 1249 53.5
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1208.0 1284 54.3
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1203.3 1304 54.4
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1178.3 1317 52.7
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1142.1 1081 58.8
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1122.8 1061 56.4
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1119.8 717 82.7
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1114.4 1371 48.3
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1112.4 1143 55.6
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1104.0 1154 55.1
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1100.1 1422 47.8
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1078.9 1354 47.6
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 4.4e-301 1038.5 1385 44.7
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.4e-299 1033.5 1049 54.0
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 1.0e-289 1000.7 979 56.0
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 1.0e-281 974.2 1289 45.6
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 5.6e-280 968.4 1309 45.8
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.8e-279 966.1 1197 48.2
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 9.0e-278 961.1 1323 46.0
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 6.7e-273 944.9 951 54.0
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.8e-241 840.5 952 49.1
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 2.8e-239 833.2 967 49.0
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.2e-235 818.5 756 56.9
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 5.9e-221 772.3 1047 46.7
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.0e-212 745.0 1421 37.4
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 1.1e-211 741.5 1096 42.6
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 1.8e-209 734.2 847 49.7
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.3e-199 701.4 764 52.2
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.6e-194 683.3 840 46.2
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 4.7e-194 682.9 1499 33.7
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.5e-173 613.6 505 66.9
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.6e-157 561.6 459 67.8
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 6.5e-151 539.7 618 48.9
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.4e-140 505.4 1101 32.9
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 1.5e-139 501.9 1519 28.5
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 2.8e-138 497.7 408 66.9
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 6.3e-130 469.9 411 64.5
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.6e-125 455.3 363 72.2
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 1.4e-108 399.1 343 65.9
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 5.2e-100 370.5 339 60.5
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.9e-87 327.8 330 51.2
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 7.8e-80 303.5 276 63.8
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 3.9e-71 274.6 1226 25.2
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 2.2e-66 258.8 410 40.2
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 3.4e-59 235.0 351 38.5
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 4.2e-57 228.0 598 33.6
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.2e-48 199.9 241 49.8
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.8e-43 181.0 190 57.4
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 1.7e-34 152.9 106 73.6
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.3e-31 143.3 156 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.8e-31 142.9 234 37.6
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 6.9e-28 131.0 76 81.6
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 7.7e-27 127.5 114 58.8
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 3.9e-23 115.2 114 53.5
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 5.1e-23 114.8 87 65.5
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-15 90.1 84 52.4
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-15 90.1 84 52.4
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.7e-15 87.8 80 55.0
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 5.7e-14 84.7 100 48.0
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.8e-12 79.7 84 59.5
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 3.2e-09 68.9 61 62.3
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 2.7e-08 65.9 89 42.7
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 4.4e-06 58.5 48 58.3
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 5.7e-06 58.2 61 54.1


User provided reference genes

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