Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.1e-155 550.8 289 100.0
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.8e-131 472.2 359 75.2
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 8.9e-130 467.2 372 72.6
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.6e-126 456.4 363 72.2
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.0e-117 427.2 368 68.8
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 7.6e-97 357.8 372 56.5
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 1.2e-94 350.5 368 56.0
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 1.6e-94 350.1 369 56.1
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 1.8e-93 346.7 364 56.9
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 3.9e-93 345.5 369 55.6
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 5.1e-93 345.1 371 55.3
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 1.9e-92 343.2 361 56.5
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 3.3e-92 342.4 369 55.6
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 3.3e-92 342.4 351 57.5
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 4.3e-92 342.0 361 56.2
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 5.7e-92 341.7 364 56.3
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 9.7e-92 340.9 361 56.2
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 1.3e-91 340.5 369 55.0
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 2.8e-91 339.3 361 54.0
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 3.7e-91 339.0 340 58.2
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 4.8e-91 338.6 372 54.6
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 8.2e-91 337.8 365 54.5
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 4.1e-90 335.5 368 54.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 1.2e-89 334.0 376 54.3
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 2.0e-89 333.2 362 53.9
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 5.9e-89 331.6 369 53.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 5.9e-89 331.6 372 53.8
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 1.0e-88 330.9 368 53.3
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 1.0e-88 330.9 366 52.7
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 1.3e-88 330.5 368 53.8
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 1.7e-88 330.1 370 53.5
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 2.2e-88 329.7 369 53.9
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 3.8e-88 328.9 365 53.4
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 3.8e-88 328.9 368 53.5
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 6.5e-88 328.2 364 54.7
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.1e-87 327.4 378 53.2
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 1.1e-87 327.4 373 54.2
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 1.1e-87 327.4 361 54.0
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 1.1e-87 327.4 368 53.3
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 1.9e-87 326.6 349 56.4
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 1.9e-87 326.6 368 53.0
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 2.5e-87 326.2 372 52.7
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 3.2e-87 325.9 355 54.9
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 4.2e-87 325.5 368 53.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 5.5e-87 325.1 368 52.7
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 7.2e-87 324.7 363 53.7
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 9.4e-87 324.3 364 54.9
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 9.4e-87 324.3 373 52.8
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 1.2e-86 323.9 364 54.9
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 1.2e-86 323.9 371 53.4
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 1.2e-86 323.9 370 53.8
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 1.6e-86 323.6 364 54.7
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.6e-86 323.6 361 52.9
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.6e-86 323.6 366 52.2
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 2.1e-86 323.2 373 53.4
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 2.1e-86 323.2 373 53.4
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 2.1e-86 323.2 354 55.1
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 2.7e-86 322.8 359 54.6
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 2.7e-86 322.8 369 52.8
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 4.6e-86 322.0 339 56.9
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 4.6e-86 322.0 400 51.5
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 7.9e-86 321.2 368 54.3
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 7.9e-86 321.2 368 51.4
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 2.3e-85 319.7 388 51.5
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 3.0e-85 319.3 367 51.0
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 3.9e-85 318.9 370 53.0
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 5.1e-85 318.5 368 53.5
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 6.7e-85 318.2 364 53.8
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 8.8e-85 317.8 368 51.1
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 1.1e-84 317.4 368 50.8
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 1.5e-84 317.0 368 52.4
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 2.0e-84 316.6 368 51.4
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.5e-84 316.2 363 52.6
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 3.3e-84 315.8 361 51.5
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 7.4e-84 314.7 319 58.6
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 9.7e-84 314.3 362 52.5
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.3e-83 313.9 371 51.8
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 3.7e-83 312.4 363 51.2
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 6.3e-83 311.6 365 52.1
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 6.3e-83 311.6 358 52.0
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 1.1e-82 310.8 350 52.6
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 3.1e-82 309.3 405 48.1
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 4.1e-82 308.9 374 52.1
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 2.6e-81 306.2 402 47.5
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 1.7e-80 303.5 292 61.3
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 1.4e-79 300.4 356 50.6
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 3.2e-79 299.3 362 49.4
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 4.2e-79 298.9 346 51.4
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 9.4e-79 297.7 330 55.2
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 9.4e-79 297.7 330 55.2
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.7e-78 295.4 290 61.4
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 6.7e-77 291.6 347 51.0
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 1.1e-76 290.8 363 49.9
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 3.3e-76 289.3 341 53.4
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 7.4e-76 288.1 337 51.0
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 2.4e-74 283.1 333 52.3
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 2.0e-73 280.0 245 65.3
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 1.0e-72 277.7 240 65.8
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 1.1e-71 274.2 315 53.7
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 4.2e-71 272.3 239 64.0
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 7.2e-71 271.6 345 49.0
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 1.4e-69 267.3 296 54.1
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 3.9e-69 265.8 360 48.3
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.3e-67 260.8 365 46.3
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 3.7e-67 259.2 360 46.7
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.1e-66 256.1 356 44.1
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 2.5e-63 246.5 227 61.2
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 4.7e-62 242.3 344 44.2
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.6e-57 227.3 362 41.4
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 6.5e-56 221.9 302 46.7
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 5.2e-53 212.2 187 65.2
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 9.8e-52 208.0 365 41.1
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 3.7e-51 206.1 299 44.1
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 2.6e-44 183.3 353 35.1
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.9e-40 169.5 219 46.1
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 2.4e-34 150.2 165 53.9
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 7.5e-28 128.6 388 28.6
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 7.5e-28 128.6 291 35.1
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.2e-25 121.3 111 61.3
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 1.8e-21 107.5 346 26.6
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 2.9e-19 100.1 161 40.4
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.4e-18 97.8 95 63.2
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 3.2e-18 96.7 161 37.3
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 1.2e-17 94.7 57 77.2
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 1.3e-16 91.3 51 80.4
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 2.3e-16 90.5 57 70.2
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 5.6e-15 85.9 57 64.9
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 2.4e-13 80.5 51 72.5
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 4.0e-13 79.7 51 72.5
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 2.0e-12 77.4 51 64.7
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 7.6e-12 75.5 51 66.7
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.9e-10 70.9 59 66.1
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 6.0e-09 65.9 85 47.1
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 8.7e-08 62.0 42 66.7


User provided reference genes

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