Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 2147.1 1141 100.0
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1898.2 1278 81.8
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1890.2 1354 78.4
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1249.2 1358 54.3
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1246.5 1362 53.5
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1245.7 1360 54.1
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1230.7 1367 52.7
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1227.6 1358 53.3
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1227.2 1364 52.7
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1208.7 1324 52.7
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1207.6 1372 51.7
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1204.1 1358 51.9
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1200.7 1358 51.8
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1198.7 1364 51.5
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1189.5 719 86.0
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1187.6 1275 54.0
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1186.0 1367 51.0
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1182.2 1362 50.5
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1176.4 1363 51.2
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1170.6 1372 50.2
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1162.9 1373 50.0
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1162.5 1360 49.8
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1158.3 1357 49.6
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1154.8 1293 53.3
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1154.0 1323 51.7
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1152.9 1362 49.9
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1152.1 1359 50.2
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1152.1 1358 50.7
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1147.5 1364 50.1
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1146.0 1357 49.2
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1144.4 1358 50.3
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1140.6 1374 49.7
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1137.9 1366 48.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1135.6 1363 49.2
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1134.4 1363 48.7
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1132.9 1332 51.7
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1132.1 992 67.2
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1130.9 977 61.6
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1125.9 1366 48.8
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1124.8 1371 48.0
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1123.2 1399 47.4
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1120.5 1346 49.0
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1117.4 1362 48.7
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1112.8 1353 48.6
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1111.3 1000 60.1
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1109.7 1351 49.4
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1107.0 1394 48.8
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1105.9 1402 48.5
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1102.0 1348 48.4
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1101.7 998 60.0
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1098.2 972 60.3
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1097.0 1361 48.9
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1095.9 1348 48.3
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1095.9 965 60.2
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1095.5 1381 48.0
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1087.8 974 60.4
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1086.6 977 58.8
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1085.5 1324 49.4
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1084.3 1324 49.3
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1082.0 1360 48.2
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1080.9 1367 47.3
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1078.5 1331 49.9
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1078.5 973 61.2
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1076.2 1328 49.1
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1075.5 1332 49.2
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1075.5 1324 49.6
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 2.7e-310 1068.9 1333 48.9
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 1.3e-309 1066.6 1325 49.1
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 1.7e-309 1066.2 1330 49.1
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 1.7e-309 1066.2 975 59.5
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 7.2e-308 1060.8 1324 49.4
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 9.4e-308 1060.4 1324 49.2
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 1.2e-307 1060.1 1372 46.6
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 3.6e-307 1058.5 1367 46.8
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 1.4e-306 1056.6 1365 47.1
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 1.4e-306 1056.6 1370 47.4
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 3.0e-306 1055.4 975 59.0
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 4.0e-306 1055.0 1324 48.6
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 3.7e-304 1048.5 1365 46.9
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 5.4e-303 1044.6 1362 47.9
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 1.6e-302 1043.1 973 60.1
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 3.6e-299 1031.9 1014 56.7
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 1.2e-297 1026.9 983 57.6
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 5.0e-293 1011.5 963 57.0
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 4.3e-292 1008.4 1354 45.3
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 4.3e-292 1008.4 1006 56.5
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 6.8e-290 1001.1 1368 45.4
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 1.2e-289 1000.3 841 64.0
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 9.8e-289 997.3 1249 47.0
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 4.1e-287 991.9 852 63.1
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.6e-286 989.9 1363 45.0
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.3e-285 986.9 991 56.3
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 3.3e-284 982.2 963 55.7
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 1.2e-262 910.6 965 54.0
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 8.9e-258 894.4 1081 49.5
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 1.1e-255 887.5 975 52.7
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 1.9e-255 886.7 982 52.3
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 5.4e-255 885.2 1001 51.3
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 6.2e-251 871.7 1067 47.1
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 3.8e-248 862.4 1348 42.5
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 5.6e-236 822.0 812 55.3
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.8e-233 812.0 732 57.8
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 2.5e-231 806.6 969 47.2
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 1.9e-223 780.4 984 45.8
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 2.5e-223 780.0 1292 40.4
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 3.2e-207 726.5 951 44.8
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 4.4e-204 716.1 970 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 5.2e-197 692.6 885 46.9
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 2.4e-186 657.1 983 42.8
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.6e-185 654.4 607 55.5
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 7.2e-183 645.6 568 58.1
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.0e-181 641.7 1079 39.7
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 2.7e-177 627.1 954 40.5
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.7e-160 571.2 505 63.6
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.8e-145 519.2 459 64.1
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 9.0e-133 479.2 764 40.4
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 1.7e-131 474.9 1085 32.2
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.4e-130 471.1 359 75.2
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 4.6e-129 466.8 520 48.3
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.0e-128 464.2 842 36.0
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 5.3e-125 453.4 408 62.5
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.1e-119 435.6 411 62.8
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 1.4e-101 375.6 341 63.3
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.2e-98 363.2 332 53.6
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 3.1e-93 347.8 326 59.8
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 6.3e-86 323.6 617 36.0
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 6.7e-80 303.5 434 41.9
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 3.2e-74 284.6 276 60.5
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 6.3e-70 270.4 927 27.4
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 2.0e-55 222.2 351 37.0
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 5.4e-53 214.2 590 32.0
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.7e-46 192.6 241 48.1
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.1e-41 175.6 190 55.8
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 7.1e-37 160.6 114 64.9
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 1.5e-34 152.9 106 73.6
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.1e-32 146.7 234 38.0
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 5.8e-31 141.0 82 82.9
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.5e-28 131.7 114 61.4
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 4.4e-23 114.8 87 65.5
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 2.2e-22 112.5 115 49.6
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.5e-15 89.7 84 51.2
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.5e-15 89.7 84 51.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.6e-15 87.4 80 53.8
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.6e-09 69.7 59 64.4
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 6.2e-09 67.8 89 46.1
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 9.9e-07 60.5 84 46.4
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.9e-06 58.9 48 58.3


User provided reference genes

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