Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 7.1e-63 243.8 128 100.0
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 3.5e-54 214.9 129 86.8
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 1.4e-50 203.0 128 81.2
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 1.4e-50 203.0 128 81.2
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.2e-49 199.9 120 82.5
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 4.5e-49 198.0 126 79.4
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.0e-48 196.8 121 82.6
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.0e-48 196.8 122 79.5
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 1.7e-48 196.1 109 88.1
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.2e-48 195.7 121 81.8
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 6.5e-48 194.1 123 79.7
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 8.4e-48 193.7 122 81.1
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 3.2e-47 191.8 121 80.2
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 4.2e-47 191.4 123 78.9
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 4.2e-47 191.4 118 80.5
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 7.1e-47 190.7 125 79.2
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 7.1e-47 190.7 120 80.8
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 7.1e-47 190.7 124 78.2
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 9.3e-47 190.3 121 79.3
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.2e-46 189.9 126 78.6
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.6e-46 189.5 124 78.2
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.6e-46 189.5 122 79.5
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 2.1e-46 189.1 118 80.5
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.1e-46 189.1 126 78.6
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 2.1e-46 189.1 120 80.0
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 2.7e-46 188.7 124 78.2
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 2.7e-46 188.7 118 79.7
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.5e-46 188.3 118 80.5
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 4.6e-46 188.0 122 77.9
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 4.6e-46 188.0 121 77.7
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 6.1e-46 187.6 124 76.6
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 7.9e-46 187.2 121 78.5
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.0e-45 186.8 118 79.7
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.0e-45 186.8 121 77.7
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.3e-45 186.4 120 82.5
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 1.8e-45 186.0 122 77.9
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 2.3e-45 185.7 111 80.2
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 2.3e-45 185.7 130 76.2
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 3.0e-45 185.3 118 78.8
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 3.9e-45 184.9 126 74.6
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.9e-45 184.9 126 74.6
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 5.1e-45 184.5 123 76.4
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 5.1e-45 184.5 127 75.6
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 6.7e-45 184.1 125 78.4
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.1e-44 183.3 125 76.8
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.1e-44 183.3 124 75.8
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 1.1e-44 183.3 125 72.8
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.5e-44 183.0 121 78.5
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.5e-44 183.0 126 74.6
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 1.5e-44 183.0 126 74.6
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 1.5e-44 183.0 126 74.6
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 1.9e-44 182.6 127 74.0
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 1.9e-44 182.6 121 77.7
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.9e-44 182.6 109 78.9
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.9e-44 182.6 125 76.0
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.9e-44 182.6 125 76.0
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 1.9e-44 182.6 126 77.0
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.9e-44 182.6 122 77.0
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 2.5e-44 182.2 127 74.0
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.3e-44 181.8 105 81.9
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.3e-44 181.4 126 73.0
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 4.3e-44 181.4 125 73.6
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 5.7e-44 181.0 113 78.8
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 7.4e-44 180.6 122 74.6
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 7.4e-44 180.6 125 74.4
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 7.4e-44 180.6 127 73.2
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 9.7e-44 180.3 121 77.7
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 9.7e-44 180.3 126 73.0
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.2e-43 179.1 126 75.4
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.8e-43 178.7 125 73.6
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.8e-43 178.7 125 73.6
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 4.8e-43 177.9 121 74.4
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 4.8e-43 177.9 129 69.8
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 6.3e-43 177.6 129 69.8
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 8.2e-43 177.2 122 75.4
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 8.2e-43 177.2 126 73.0
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 1.1e-42 176.8 143 68.5
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.8e-42 176.0 122 71.3
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 2.4e-42 175.6 122 73.8
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 2.4e-42 175.6 120 72.5
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 4.1e-42 174.9 136 70.6
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 5.3e-42 174.5 125 72.0
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 5.3e-42 174.5 125 72.0
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 5.3e-42 174.5 125 72.0
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 6.9e-42 174.1 126 71.4
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 1.2e-41 173.3 120 70.8
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 1.2e-41 173.3 122 70.5
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.5e-41 172.9 108 77.8
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 2.0e-41 172.6 127 73.2
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 2.6e-41 172.2 121 73.6
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 2.6e-41 172.2 126 70.6
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 2.6e-41 172.2 122 70.5
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 3.4e-41 171.8 111 74.8
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 3.4e-41 171.8 111 74.8
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 3.4e-41 171.8 122 72.1
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 4.5e-41 171.4 124 66.9
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 4.5e-41 171.4 124 68.5
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 5.9e-41 171.0 121 71.1
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 5.9e-41 171.0 123 72.4
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 5.9e-41 171.0 99 79.8
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 7.7e-41 170.6 109 73.4
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 7.7e-41 170.6 108 77.8
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.0e-40 170.2 133 67.7
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.3e-40 169.9 112 73.2
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.7e-40 169.5 116 71.6
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 2.2e-40 169.1 108 76.9
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 2.9e-40 168.7 127 70.9
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 3.8e-40 168.3 119 69.7
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 5.0e-40 167.9 122 71.3
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 5.0e-40 167.9 126 69.0
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 6.5e-40 167.5 97 79.4
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.4e-39 166.4 126 70.6
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 3.2e-39 165.2 126 70.6
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 7.2e-39 164.1 123 65.9
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.6e-38 161.8 88 87.5
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 4.6e-38 161.4 117 69.2
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 6.1e-38 161.0 120 66.7
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 7.9e-38 160.6 159 56.6
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.0e-37 160.2 116 69.8
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.0e-37 160.2 123 64.2
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.4e-37 159.8 166 56.6
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 3.0e-37 158.7 101 78.2
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 5.1e-37 157.9 87 85.1
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 9.7e-36 153.7 163 54.6
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.7e-35 152.9 93 78.5
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.8e-35 151.4 156 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.1e-34 150.2 124 62.1
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.1e-34 150.2 121 64.5
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.8e-34 149.4 109 63.3
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.8e-34 149.4 113 62.8
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.9e-34 147.5 115 61.7
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.0e-33 146.0 115 60.9
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 7.2e-31 137.5 101 62.4
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.2e-30 136.7 125 63.2
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 6.1e-30 134.4 91 71.4
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 7.9e-30 134.0 109 62.4
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 5.1e-29 131.3 89 75.3
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.1e-28 130.2 81 77.8
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 1.5e-28 129.8 93 71.0
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.3e-28 128.6 118 61.9
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.2e-27 125.9 118 61.9
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 6.3e-27 124.4 81 76.5
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 4.1e-26 121.7 78 76.9
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 4.1e-26 121.7 77 79.2
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.5e-25 118.2 78 70.5
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 2.2e-24 115.9 69 78.3
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 6.5e-24 114.4 87 63.2
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 6.5e-24 114.4 63 81.0
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 5.5e-23 111.3 113 47.8
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.3e-21 105.9 95 54.7
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 4.1e-18 95.1 97 48.5
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 9.1e-18 94.0 99 44.4
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 9.1e-18 94.0 56 80.4
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 2.2e-16 89.4 118 49.2
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 1.9e-15 86.3 104 46.2
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.2e-15 85.5 70 58.6
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 4.8e-11 71.6 93 35.5
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.1e-10 68.9 50 64.0
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 7.7e-09 64.3 34 85.3
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.6e-06 56.6 36 77.8


User provided reference genes

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