Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 1.2e-172 609.8 306 100.0
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 3.6e-121 438.7 310 71.9
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.4e-120 436.8 310 71.9
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 3.1e-120 435.6 309 72.8
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 5.2e-120 434.9 314 72.3
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 2.0e-119 433.0 310 72.9
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 2.6e-119 432.6 310 71.9
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 2.6e-119 432.6 308 73.1
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 4.4e-119 431.8 308 72.7
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 2.9e-118 429.1 309 71.8
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 2.9e-118 429.1 311 72.7
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 6.4e-118 427.9 310 69.7
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 1.1e-117 427.2 310 73.2
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 5.4e-117 424.9 310 70.3
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 5.4e-117 424.9 309 71.2
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 7.0e-117 424.5 307 71.7
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.2e-116 423.7 310 71.3
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 2.0e-116 422.9 310 70.0
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 4.6e-116 421.8 310 70.6
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.0e-115 420.6 309 70.9
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 6.6e-115 417.9 315 70.2
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 6.6e-115 417.9 315 70.2
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 8.6e-115 417.5 310 70.6
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.1e-114 417.2 314 71.0
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.5e-114 416.0 309 70.6
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 4.3e-114 415.2 310 70.0
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.6e-113 413.3 310 69.7
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 1.6e-113 413.3 314 70.1
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 1.6e-113 413.3 315 71.1
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 3.6e-113 412.1 309 69.3
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 4.7e-113 411.8 350 62.6
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 1.1e-112 410.6 314 69.4
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.1e-112 410.6 308 66.9
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 1.1e-112 410.6 315 70.5
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.4e-112 410.2 315 69.5
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.4e-112 410.2 315 69.5
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.4e-112 410.2 315 70.8
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 3.1e-112 409.1 309 69.9
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 3.1e-112 409.1 308 66.9
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 4.0e-112 408.7 308 66.9
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 4.0e-112 408.7 308 72.4
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 3.4e-111 405.6 314 69.4
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 4.4e-111 405.2 308 65.9
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 3.2e-109 399.1 310 68.4
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 7.0e-109 397.9 304 66.4
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.0e-107 394.0 335 65.1
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 1.0e-107 394.0 325 65.8
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.7e-107 393.3 308 64.3
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 2.3e-107 392.9 316 67.1
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 2.3e-107 392.9 314 65.3
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 3.9e-107 392.1 310 64.8
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 6.6e-107 391.3 300 66.0
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 1.1e-106 390.6 304 67.1
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 4.3e-106 388.7 306 66.0
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 7.3e-106 387.9 308 68.2
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 1.1e-104 384.0 309 66.7
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 1.4e-104 383.6 315 64.8
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 1.4e-104 383.6 304 65.8
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 1.8e-104 383.3 311 64.3
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 2.3e-104 382.9 318 64.8
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.5e-103 380.2 305 65.6
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 2.2e-102 376.3 317 63.4
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.9e-101 373.2 305 63.9
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 1.9e-101 373.2 291 67.7
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 5.4e-101 371.7 325 61.5
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.3e-99 367.1 287 65.9
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 3.0e-99 365.9 311 62.7
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 3.9e-99 365.5 310 61.9
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.5e-98 363.6 313 62.3
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 3.3e-98 362.5 300 64.0
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 9.5e-98 360.9 301 62.1
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 3.6e-97 359.0 313 61.7
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 4.7e-97 358.6 284 66.5
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.8e-96 356.7 284 66.2
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 1.8e-96 356.7 285 65.3
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.8e-96 356.7 289 66.8
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 3.1e-96 355.9 284 65.1
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 8.9e-96 354.4 288 64.2
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.2e-95 354.0 295 63.7
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.5e-95 353.6 284 65.1
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.5e-95 353.6 304 62.8
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 2.6e-95 352.8 285 64.2
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 3.4e-95 352.4 309 60.8
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 4.4e-95 352.1 285 64.2
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 4.4e-95 352.1 290 64.5
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 7.6e-95 351.3 317 62.1
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 9.9e-95 350.9 318 61.0
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.3e-94 350.5 284 64.8
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 6.4e-94 348.2 283 64.0
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.7e-91 340.1 337 54.3
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.7e-91 340.1 310 60.3
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 3.0e-91 339.3 288 62.5
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 4.3e-90 335.5 316 58.5
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.3e-83 313.9 328 52.1
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 5.1e-83 312.0 314 56.7
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 2.5e-82 309.7 300 56.3
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 3.3e-82 309.3 319 56.1
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 5.6e-82 308.5 342 54.7
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 1.6e-81 307.0 262 62.6
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 3.4e-79 299.3 363 47.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 3.2e-77 292.7 247 65.2
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.7e-76 289.7 288 55.9
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 4.8e-73 278.9 225 67.1
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 7.6e-71 271.6 298 50.3
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.3e-70 270.8 223 65.9
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 6.9e-64 248.4 196 68.9
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 6.5e-62 241.9 296 47.3
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 6.7e-59 231.9 228 58.3
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 2.2e-57 226.9 296 46.3
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.4e-53 214.2 138 76.1
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 1.3e-49 201.1 344 38.4
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 6.3e-49 198.7 227 52.4
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 7.9e-44 181.8 188 57.4
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 9.4e-37 158.3 124 64.5
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 3.1e-32 143.3 96 71.9
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.5e-31 139.4 91 73.6
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 6.8e-27 125.6 176 46.0
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 7.5e-26 122.1 281 35.2
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 6.3e-25 119.0 82 70.7
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 6.3e-25 119.0 82 70.7
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 6.5e-22 109.0 350 28.0
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 1.5e-21 107.8 333 27.3
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 2.2e-17 94.0 83 61.4
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.2e-15 88.2 49 83.7
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 2.7e-15 87.0 93 50.5
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.9e-14 83.6 44 84.1
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 4.2e-13 79.7 49 77.6
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 7.5e-10 68.9 56 60.7
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-09 68.2 81 51.9
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 1.3e-09 68.2 287 22.6
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 2.9e-09 67.0 81 50.6
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 2.9e-09 67.0 81 50.6


User provided reference genes

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