Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 0.0e+00 1356.3 688 100.0
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 2.0e-273 945.7 675 71.1
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 4.7e-270 934.5 688 68.8
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 4.0e-269 931.4 699 68.7
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 8.9e-269 930.2 701 69.2
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.7e-267 926.0 702 67.1
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 5.4e-266 921.0 704 67.0
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 7.0e-266 920.6 695 67.9
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 1.3e-264 916.4 699 66.1
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 2.5e-263 912.1 693 67.1
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 1.6e-262 909.4 690 67.2
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.5e-260 902.9 691 67.9
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 2.0e-260 902.5 695 66.0
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 2.6e-260 902.1 706 66.0
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.9e-259 898.7 695 65.9
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 4.9e-259 897.9 698 65.6
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.4e-258 896.3 695 65.6
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 1.9e-258 896.0 676 67.0
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.4e-258 895.6 705 66.1
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 9.2e-258 893.6 687 67.8
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.6e-257 892.9 713 65.4
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 2.7e-257 892.1 690 68.1
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 3.5e-257 891.7 680 65.4
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 6.0e-257 891.0 691 66.4
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 8.6e-256 887.1 687 67.2
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 4.3e-255 884.8 691 67.1
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 7.3e-255 884.0 682 65.7
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 9.5e-255 883.6 704 65.2
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.8e-253 879.4 680 64.7
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.8e-253 879.4 676 66.3
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 3.1e-253 878.6 693 65.9
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 3.1e-253 878.6 695 65.6
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 4.4e-252 874.8 676 66.3
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 4.4e-252 874.8 677 66.5
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 6.4e-251 870.9 689 65.0
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.4e-250 869.8 702 65.0
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 5.4e-250 867.8 696 66.2
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 9.2e-250 867.1 689 65.3
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.6e-249 866.3 702 64.7
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 2.7e-249 865.5 695 64.3
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 3.0e-248 862.1 671 66.0
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 8.6e-248 860.5 707 63.2
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.9e-247 859.4 687 66.8
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 5.6e-247 857.8 683 64.7
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 2.4e-245 852.4 702 63.4
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 4.0e-245 851.7 701 63.8
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 5.2e-245 851.3 679 64.7
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 5.2e-245 851.3 696 62.9
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 2.6e-244 849.0 712 62.8
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.1e-242 843.6 700 62.9
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 3.2e-242 842.0 723 61.8
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.2e-241 840.1 668 64.4
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 2.5e-239 832.4 695 63.7
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 4.3e-239 831.6 694 63.0
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 6.2e-238 827.8 487 88.5
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 4.0e-237 825.1 688 62.9
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 2.6e-236 822.4 602 69.3
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 4.2e-234 815.1 691 63.2
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 8.7e-232 807.4 687 62.3
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 9.0e-229 797.3 718 59.7
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 5.8e-228 794.7 697 59.7
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 1.4e-226 790.0 624 64.4
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 3.5e-225 785.4 782 55.9
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.3e-224 782.7 695 59.9
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.5e-223 780.0 659 63.3
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.3e-222 776.9 700 60.4
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.5e-220 770.0 536 72.0
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 3.4e-220 768.8 686 60.2
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 5.8e-220 768.1 688 59.2
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 6.2e-214 748.0 684 58.9
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 5.3e-213 745.0 575 66.8
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 2.5e-210 736.1 689 58.9
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 3.0e-208 729.2 536 67.7
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 4.3e-207 725.3 707 54.2
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 6.5e-203 711.4 517 67.7
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.2e-202 708.0 698 56.4
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.1e-199 700.7 682 55.9
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 2.5e-199 699.5 494 71.9
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 5.7e-199 698.4 712 55.1
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 7.7e-196 688.0 443 77.2
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.4e-192 677.2 530 65.1
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 2.4e-189 666.4 691 53.1
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 5.3e-189 665.2 567 62.8
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 7.2e-186 654.8 690 52.8
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 1.2e-185 654.1 500 68.0
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.4e-184 650.6 709 48.8
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.3e-183 646.0 707 50.2
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 2.5e-178 629.8 704 51.6
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 8.6e-163 578.2 707 45.7
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 1.1e-157 561.2 392 71.4
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 1.0e-147 528.1 493 58.8
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 9.2e-141 505.0 350 72.9
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 7.8e-140 501.9 350 72.6
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.3e-138 496.1 352 69.0
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.3e-138 495.4 348 70.4
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 8.1e-137 491.9 405 61.2
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.7e-134 483.0 348 68.7
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 4.2e-125 453.0 782 40.2
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.5e-122 443.7 358 60.9
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 2.2e-118 430.6 747 37.3
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 4.6e-116 422.9 819 34.4
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 6.6e-115 419.1 697 38.7
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 5.6e-114 416.0 314 68.2
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.9e-99 366.7 339 55.8
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.8e-94 350.1 319 55.8
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 1.1e-90 338.6 725 32.7
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 4.3e-90 336.7 314 59.2
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.1e-72 278.9 289 52.6
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.2e-70 271.2 310 48.7
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.9e-67 260.4 206 66.5
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 6.7e-67 259.6 195 65.6
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 3.3e-66 257.3 250 56.0
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 2.6e-63 247.7 645 30.7
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 5.9e-63 246.5 195 63.6
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 1.1e-61 242.3 163 72.4
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 5.3e-56 223.4 174 66.1
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 5.5e-53 213.4 265 46.0
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 8.0e-52 209.5 205 52.2
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 2.2e-49 201.4 168 58.9
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 2.0e-47 194.9 148 63.5
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 2.3e-43 181.4 174 54.6
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 3.5e-31 141.0 130 56.2
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.4e-27 129.0 142 52.1
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 8.9e-27 126.3 145 49.7
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 1.1e-24 119.4 144 50.0
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.2e-24 117.9 158 46.2
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.0e-22 112.8 134 49.3
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 1.1e-21 109.4 144 45.8
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 4.7e-12 77.4 52 71.2
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 4.0e-11 74.3 51 66.7
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 5.2e-11 73.9 76 52.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 6.8e-11 73.6 81 54.3
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 2.4e-08 65.1 36 94.4
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 7.1e-08 63.5 72 47.2


User provided reference genes

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