Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 0.0e+00 1454.1 716 100.0
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 0.0e+00 1133.6 712 78.2
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1130.5 711 76.8
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1112.1 711 76.1
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1108.2 707 74.5
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1105.1 715 74.8
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1104.7 712 74.9
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1102.4 713 74.2
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1097.4 704 75.4
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1095.9 712 75.1
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1095.1 707 74.0
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1092.0 712 73.6
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1089.3 707 73.8
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1088.9 711 74.7
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1086.2 710 73.8
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1085.9 702 73.8
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1085.9 707 74.0
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1085.1 711 74.1
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1084.7 707 74.0
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1082.0 707 72.7
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1081.6 716 72.8
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1076.2 710 72.4
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1075.8 707 73.4
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 2.4e-311 1071.6 707 73.7
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.4e-311 1071.6 711 73.1
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 5.9e-311 1070.5 700 72.7
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 8.2e-310 1066.6 709 72.2
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 7.0e-309 1063.5 712 71.8
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.6e-308 1062.4 706 72.9
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 713 71.8
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 2.7e-308 1061.6 716 71.1
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 1.3e-307 1059.3 709 73.1
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.7e-307 1058.9 717 72.2
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 3.8e-307 1057.7 713 72.1
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 1.1e-306 1056.2 717 72.0
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 1.1e-306 1056.2 717 70.6
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 1.5e-306 1055.8 707 72.6
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 7.2e-306 1053.5 709 72.6
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 2.7e-305 1051.6 718 71.4
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.1e-305 1050.4 718 71.9
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.1e-305 1050.4 718 71.2
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 8.0e-305 1050.0 717 70.4
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 1.8e-304 1048.9 713 71.8
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 1.8e-304 1048.9 716 71.4
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 2.3e-304 1048.5 718 71.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 5.2e-304 1047.3 718 71.0
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.2e-303 1046.2 729 70.9
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.2e-303 1046.2 702 71.7
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.7e-302 1042.3 713 70.3
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 2.2e-302 1042.0 696 72.7
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 2.8e-302 1041.6 712 71.1
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 2.8e-302 1041.6 715 72.6
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 3.7e-302 1041.2 747 69.1
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.3e-302 1040.4 718 71.2
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 1.1e-301 1039.6 717 70.7
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 708 71.8
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 3.1e-301 1038.1 706 71.5
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.2e-300 1036.2 738 69.4
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 2.0e-300 1035.4 713 71.0
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 2.7e-300 1035.0 799 65.1
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.0e-299 1033.1 710 70.8
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.3e-299 1032.7 715 71.7
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 8.6e-299 1030.0 707 70.9
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.5e-298 1029.2 714 70.3
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 3.5e-292 1008.1 711 69.8
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 7.8e-292 1006.9 713 69.7
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 3.9e-291 1004.6 705 68.4
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 8.6e-291 1003.4 713 69.3
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.5e-290 1002.7 670 71.8
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 1.4e-288 996.1 701 69.5
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 2.3e-288 995.3 709 68.4
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 5.2e-288 994.2 714 69.3
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.5e-287 992.6 703 69.4
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.7e-286 988.0 706 67.8
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 6.4e-286 987.3 712 67.0
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 4.1e-285 984.6 711 68.1
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.5e-284 981.5 739 66.7
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 4.6e-284 981.1 703 69.1
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 4.6e-284 981.1 693 68.8
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.7e-283 979.2 707 67.5
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 3.0e-283 978.4 706 67.3
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 1.2e-279 966.5 713 67.0
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 3.4e-279 964.9 781 62.4
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 6.8e-272 940.6 696 65.2
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.3e-270 936.4 716 64.5
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 3.2e-269 931.8 707 64.6
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 1.2e-268 929.9 770 61.4
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 3.9e-267 924.9 716 65.6
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.4e-264 915.6 721 63.4
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 8.4e-262 907.1 598 72.9
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 3.9e-259 898.3 588 72.8
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 1.9e-258 896.0 680 64.4
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 6.9e-256 887.5 558 75.3
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 1.4e-253 879.8 726 61.8
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 4.0e-248 861.7 714 60.5
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 2.7e-244 849.0 711 60.9
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 1.8e-235 819.7 545 73.0
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.1e-234 817.0 448 91.7
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 9.7e-226 787.3 526 73.6
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 2.7e-212 742.7 694 54.0
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 4.2e-205 718.8 703 52.2
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 3.3e-202 709.1 748 53.5
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 3.2e-189 666.0 704 49.1
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 3.0e-179 632.9 880 41.2
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 1.2e-170 604.4 699 47.9
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 1.7e-166 590.5 846 40.4
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 3.1e-163 579.7 390 69.0
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.6e-159 567.4 495 56.6
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 3.5e-143 513.1 754 41.1
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 3.0e-142 510.0 746 41.4
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 4.6e-135 486.1 724 39.6
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.6e-127 461.1 763 38.9
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 2.1e-127 460.7 812 36.7
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.0e-118 430.3 337 68.2
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.1e-115 421.8 302 71.2
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.2e-106 391.7 358 58.1
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 2.9e-73 280.8 270 54.1
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.2e-71 275.4 201 66.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 5.6e-64 250.0 188 64.4
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 3.0e-57 227.6 153 73.9
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 8.0e-55 219.5 164 64.0
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 2.1e-39 168.3 102 78.4
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 5.2e-38 163.7 114 70.2
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 3.4e-37 161.0 194 50.0
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.2e-31 142.5 121 57.0
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 4.7e-31 140.6 100 70.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.9e-27 128.6 83 69.9
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 1.7e-20 105.5 61 80.3
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 5.4e-19 100.5 148 44.6
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 4.8e-15 87.4 63 63.5
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.1e-14 86.3 62 64.5
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 3.8e-12 77.8 41 85.4
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 3.8e-12 77.8 59 64.4
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 4.6e-10 70.9 47 68.1
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 5.6e-08 63.9 51 49.0


User provided reference genes

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