Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.1e-65 253.1 125 100.0
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.7e-61 239.2 121 96.7
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.0e-53 213.4 123 82.9
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.3e-53 213.0 121 81.8
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.2e-53 212.2 121 83.5
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 2.9e-53 211.8 121 82.6
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 5.0e-53 211.1 121 81.8
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 6.5e-53 210.7 123 82.1
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 8.5e-53 210.3 120 83.3
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.5e-52 209.5 121 82.6
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.5e-52 209.5 121 80.2
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.5e-52 209.5 120 83.3
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 1.9e-52 209.1 121 80.2
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.5e-52 208.8 121 82.6
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 2.5e-52 208.8 120 81.7
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 2.5e-52 208.8 120 81.7
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.2e-52 208.4 120 82.5
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 3.2e-52 208.4 121 81.0
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 4.2e-52 208.0 120 82.5
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 5.5e-52 207.6 121 81.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 7.2e-52 207.2 121 80.2
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 7.2e-52 207.2 123 81.3
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 1.6e-51 206.1 120 80.8
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 1.6e-51 206.1 120 80.0
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 3.6e-51 204.9 120 80.0
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 4.7e-51 204.5 120 79.2
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 4.7e-51 204.5 123 78.9
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 6.1e-51 204.1 123 77.2
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 6.1e-51 204.1 120 82.5
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 6.1e-51 204.1 121 80.2
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 6.1e-51 204.1 120 80.0
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 6.1e-51 204.1 120 80.0
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 8.0e-51 203.8 120 79.2
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 8.0e-51 203.8 120 80.8
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.0e-50 203.4 120 79.2
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.0e-50 203.4 121 77.7
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 1.4e-50 203.0 123 78.9
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 1.4e-50 203.0 123 77.2
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.8e-50 202.6 121 79.3
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 3.0e-50 201.8 124 75.8
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 4.0e-50 201.4 120 79.2
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 4.0e-50 201.4 120 80.8
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 4.0e-50 201.4 120 78.3
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 5.2e-50 201.1 123 78.9
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 5.2e-50 201.1 123 76.4
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 5.2e-50 201.1 123 75.6
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.2e-50 201.1 120 79.2
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 5.2e-50 201.1 120 79.2
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 6.7e-50 200.7 120 81.7
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 8.8e-50 200.3 120 80.0
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 8.8e-50 200.3 120 80.0
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.2e-49 199.9 123 77.2
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 1.2e-49 199.9 120 79.2
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 1.2e-49 199.9 120 79.2
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 1.5e-49 199.5 121 77.7
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.5e-49 199.5 120 77.5
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 1.5e-49 199.5 123 76.4
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.5e-49 199.5 120 78.3
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.5e-49 199.5 120 78.3
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.5e-49 199.5 121 78.5
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 2.0e-49 199.1 120 75.8
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 2.6e-49 198.7 123 76.4
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 2.6e-49 198.7 123 74.8
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 2.6e-49 198.7 121 77.7
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 2.6e-49 198.7 121 76.9
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 3.3e-49 198.4 119 80.7
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 4.4e-49 198.0 123 74.8
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 5.7e-49 197.6 120 79.2
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 5.7e-49 197.6 121 77.7
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 7.5e-49 197.2 121 78.5
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 7.5e-49 197.2 123 74.8
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 9.7e-49 196.8 121 76.9
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 9.7e-49 196.8 116 81.9
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 1.3e-48 196.4 121 77.7
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.3e-48 196.4 120 79.2
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 1.3e-48 196.4 120 75.8
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.7e-48 196.1 120 79.2
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 1.7e-48 196.1 120 79.2
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 2.2e-48 195.7 123 75.6
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.2e-48 195.7 121 76.0
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.8e-48 195.3 123 77.2
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 3.7e-48 194.9 120 75.8
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 3.7e-48 194.9 120 75.8
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 3.7e-48 194.9 123 74.8
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 4.8e-48 194.5 121 73.6
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.8e-48 194.5 120 75.8
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 6.3e-48 194.1 123 74.8
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 8.2e-48 193.7 120 75.8
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 8.2e-48 193.7 124 75.8
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 1.1e-47 193.4 123 74.0
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 1.1e-47 193.4 120 77.5
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 1.4e-47 193.0 120 76.7
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.4e-47 193.0 120 75.8
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 3.1e-47 191.8 121 75.2
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 4.1e-47 191.4 120 75.0
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 5.3e-47 191.0 124 72.6
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 5.3e-47 191.0 120 74.2
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 5.3e-47 191.0 120 73.3
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 7.0e-47 190.7 124 71.8
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 7.0e-47 190.7 145 66.2
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 1.2e-46 189.9 124 71.8
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 1.2e-46 189.9 124 71.8
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 1.6e-46 189.5 124 71.8
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.7e-46 188.7 120 74.2
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 3.5e-46 188.3 122 75.4
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 3.5e-46 188.3 120 74.2
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 5.9e-46 187.6 123 70.7
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 5.9e-46 187.6 111 80.2
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 5.9e-46 187.6 145 66.2
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 1.0e-45 186.8 121 72.7
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.9e-45 185.3 132 71.2
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 3.8e-45 184.9 123 69.9
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 5.0e-45 184.5 120 72.5
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 6.5e-45 184.1 132 71.2
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 4.2e-44 181.4 119 74.8
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.1e-43 179.1 120 68.3
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 2.1e-43 179.1 123 65.9
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.7e-43 178.7 120 70.8
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 1.0e-42 176.8 120 68.3
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.8e-42 176.0 121 66.1
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.2e-41 173.3 106 78.3
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.6e-41 172.2 106 76.4
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.4e-41 171.8 123 66.7
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.4e-41 171.8 123 66.7
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.2e-40 169.1 106 75.5
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 4.8e-40 167.9 120 63.3
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.1e-39 166.8 106 73.6
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 1.9e-36 156.0 121 61.2
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 1.2e-33 146.7 100 74.0
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 2.0e-33 146.0 124 57.3
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 3.4e-33 145.2 84 81.0
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 1.2e-30 136.7 93 69.9
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.0e-30 136.0 120 54.2
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.7e-30 135.6 83 78.3
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 5.9e-30 134.4 121 58.7
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 4.7e-27 124.8 120 50.8
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 2.6e-25 119.0 70 82.9
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 9.5e-20 100.5 64 75.0
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 3.1e-18 95.5 108 47.2
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.6e-12 74.7 39 79.5
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 4.7e-11 71.6 48 66.7
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 2.0e-09 66.2 40 75.0
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.4e-09 65.1 40 70.0
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.9e-09 63.9 33 81.8
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.9e-09 63.9 33 81.8
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 9.9e-09 63.9 40 67.5
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 2.9e-08 62.4 44 65.9
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 4.9e-08 61.6 43 67.4
Lsat_1_v5_gn_1_100681 Lactuca sativa HOM05D003829 ORTHO05D228871 2.7e-06 55.8 34 73.5


User provided reference genes

Program Settings