Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 2.3e-128 463.4 511 100.0
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 1.2e-92 344.7 505 87.7
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 1.5e-92 344.4 505 87.5
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.2e-91 340.5 500 87.4
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 3.0e-88 330.1 505 86.1
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 2.0e-87 327.4 500 86.8
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 6.3e-86 322.4 503 86.1
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 1.1e-85 321.6 505 85.3
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.1e-85 321.6 505 85.3
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.8e-85 320.9 505 85.7
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.4e-85 320.5 500 86.6
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 5.3e-85 319.3 509 79.2
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 9.1e-85 318.5 506 80.4
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 3.4e-84 316.6 505 85.1
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 1.7e-83 314.3 500 85.2
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 3.8e-83 313.2 498 86.1
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.0e-83 312.8 500 73.2
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 5.0e-83 312.8 500 86.4
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 6.5e-83 312.4 504 80.8
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 8.5e-83 312.0 506 83.6
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.1e-82 311.6 500 86.0
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 2.5e-82 310.5 502 84.7
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 2.5e-82 310.5 505 81.6
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 5.5e-82 309.3 505 84.4
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 7.2e-82 308.9 505 84.2
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 4.7e-81 306.2 498 85.3
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 2.3e-80 303.9 508 83.3
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.1e-79 301.6 508 83.1
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.5e-79 301.2 508 82.9
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 2.0e-79 300.8 508 83.7
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.6e-79 300.4 503 83.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 7.4e-79 298.9 504 80.4
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 9.7e-79 298.5 503 83.3
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 2.8e-78 297.0 500 84.4
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 3.7e-78 296.6 506 82.2
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 4.8e-78 296.2 487 84.2
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 5.3e-77 292.7 503 82.9
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 2.0e-76 290.8 500 83.6
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 2.0e-76 290.8 505 81.2
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.6e-76 290.4 506 81.4
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.6e-76 290.4 493 84.8
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.5e-76 290.0 501 82.4
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 4.5e-76 289.7 498 83.1
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 4.5e-76 289.7 503 82.5
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.2e-75 287.3 508 82.1
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 2.9e-75 287.0 498 82.3
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 3.8e-75 286.6 506 83.6
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 6.5e-75 285.8 498 82.7
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.1e-74 285.0 499 78.2
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.9e-74 284.3 498 82.3
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 4.2e-74 283.1 501 82.2
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 4.2e-74 283.1 501 83.0
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.2e-73 281.6 505 81.8
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 2.1e-73 280.8 500 82.0
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.0e-72 278.5 504 81.9
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 2.3e-72 277.3 498 81.1
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 2.3e-72 277.3 496 83.7
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 4.0e-72 276.6 502 83.5
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 6.7e-72 275.8 508 81.3
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.5e-71 274.6 505 80.8
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.5e-71 274.6 500 82.8
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 2.0e-71 274.2 498 80.5
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 3.3e-71 273.5 502 83.1
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 3.3e-71 273.5 505 73.9
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 9.7e-71 271.9 499 75.6
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 3.7e-70 270.0 499 75.2
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 8.2e-70 268.9 499 74.7
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.8e-69 267.7 499 74.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 2.4e-69 267.3 507 80.7
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 3.1e-69 266.9 508 80.9
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 5.3e-69 266.2 499 74.5
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 5.9e-68 262.7 477 82.4
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 7.7e-68 262.3 499 73.9
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 2.9e-67 260.4 501 80.8
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 5.5e-66 256.1 498 80.5
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 1.2e-65 255.0 507 80.5
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 5.2e-64 249.6 294 83.3
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 6.8e-64 249.2 298 82.2
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.6e-63 247.3 504 79.4
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 3.4e-63 246.9 496 80.6
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 7.5e-63 245.7 507 77.5
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.3e-62 245.0 500 79.4
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 3.7e-62 243.4 500 71.8
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 4.1e-61 240.0 455 77.8
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 7.0e-61 239.2 502 79.9
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 9.1e-61 238.8 502 79.7
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.6e-60 238.0 508 78.9
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 6.5e-59 232.6 159 67.3
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 8.6e-59 232.3 294 80.3
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.9e-58 231.1 159 66.7
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.5e-58 230.7 504 71.6
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 3.3e-58 230.3 159 68.6
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 2.8e-57 227.3 494 79.8
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.5e-55 221.5 157 65.6
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 2.0e-55 221.1 502 59.8
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 2.0e-55 221.1 512 75.2
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 5.9e-52 209.5 497 76.9
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 4.3e-50 203.4 504 75.8
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.8e-48 198.0 292 77.7
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.0e-47 194.5 296 67.2
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 4.0e-40 170.2 502 69.3
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 4.9e-38 163.3 237 86.5
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 1.2e-25 122.1 72 79.2
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 2.8e-25 120.9 82 70.7
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 3.6e-25 120.6 79 72.2
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.2e-20 105.5 77 61.0
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.1e-20 104.8 72 69.4
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 6.6e-19 99.8 149 34.2
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.9e-18 98.2 67 70.1
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 9.6e-18 95.9 423 78.7
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 2.8e-17 94.4 141 35.5
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 2.5e-10 71.2 59 61.0
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.5e-10 71.2 48 68.8
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 6.2e-09 66.6 142 26.8
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 6.2e-09 66.6 146 26.0
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 6.2e-09 66.6 46 65.2
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 8.1e-09 66.2 155 26.5
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 1.1e-08 65.9 146 26.0
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 4.0e-08 63.9 146 28.8
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 5.3e-08 63.5 146 26.7
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 9.0e-08 62.8 146 24.7
Rhsim12G0158600 Rhododendron simsii HOM05D003056 ORTHO05D003422 9.0e-08 62.8 146 25.3
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 1.2e-07 62.4 146 27.4
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 2.0e-07 61.6 142 25.4
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 3.4e-07 60.8 146 26.7
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 4.5e-07 60.5 146 24.7
vmacro16033 Vaccinium macrocarpon HOM05D003056 ORTHO05D003422 4.5e-07 60.5 145 24.1
CSS0049173 Camellia sinensis var. sinensis HOM05D003056 ORTHO05D003422 5.8e-07 60.1 146 26.0
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 7.6e-07 59.7 125 26.4
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 7.6e-07 59.7 155 25.2
SGA_v2.0_scaffold66G22432 Striga asiatica HOM05D003056 ORTHO05D003422 9.9e-07 59.3 146 25.3
CANSAT11G0661 Cannabis sativa HOM05D003056 ORTHO05D003422 1.3e-06 58.9 146 25.3
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 1.3e-06 58.9 146 27.4
Migut.J01501 Erythranthe guttata HOM05D003056 ORTHO05D003422 1.7e-06 58.5 156 21.8
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 1.7e-06 58.5 142 27.5
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 2.9e-06 57.8 121 28.1
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 2.9e-06 57.8 145 29.7
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 3.8e-06 57.4 155 23.9
CANSAT80G2044 Cannabis sativa HOM05D000001 ORTHO05D000003 3.8e-06 57.4 98 33.7
CANSAT80G2863 Cannabis sativa HOM05D000001 ORTHO05D000003 3.8e-06 57.4 98 33.7
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 4.9e-06 57.0 145 29.0
COL.COLO4_17527 Corchorus olitorius HOM05D000891 ORTHO05D008746 6.4e-06 56.6 131 30.5
Thhalv10022551m.g Eutrema salsugineum HOM05D003056 ORTHO05D003422 6.4e-06 56.6 146 24.0
THA.LOC104804489 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 6.4e-06 56.6 117 27.4
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 8.4e-06 56.2 142 26.1
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 8.4e-06 56.2 140 28.6


User provided reference genes

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