Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 4244.1 2231 100.0
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2498.8 2211 64.2
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2473.7 2213 62.9
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2446.0 2213 63.3
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2440.6 2209 62.0
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2437.1 2233 62.1
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2433.7 2210 62.2
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2396.7 2219 62.1
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2394.0 2214 61.2
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2392.5 2209 61.1
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2390.5 2206 60.9
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2375.9 2232 60.2
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2369.3 2236 60.3
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2344.7 2225 61.1
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2344.7 2202 60.4
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2344.3 2270 59.3
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2342.4 2262 59.2
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2336.6 2222 59.7
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2334.3 2212 60.4
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2328.9 2280 58.5
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2316.2 2211 59.7
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2309.6 2223 59.9
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2296.5 2237 60.4
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2289.2 2220 58.4
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2271.9 2266 58.0
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2269.6 2218 58.1
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2262.3 2231 58.2
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2258.0 2227 58.3
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2256.9 2225 58.3
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2249.9 2215 58.6
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2238.0 2225 58.2
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2237.6 2225 57.6
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2219.5 2221 56.8
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2191.8 2244 56.7
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 2166.0 2237 56.6
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 2159.8 2234 56.5
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2157.1 2329 55.0
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 2146.3 2265 55.8
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2127.1 2189 56.9
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2122.4 2217 56.6
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2105.5 2212 56.4
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2085.5 2215 55.6
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2084.7 2223 55.7
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2018.0 2021 57.8
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2018.0 2299 53.2
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2013.8 2020 57.4
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1991.1 2135 54.3
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1989.9 2278 53.8
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1982.2 2209 53.6
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1981.1 2241 52.8
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1977.6 2279 52.7
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1973.4 2233 53.4
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1971.4 2210 52.8
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1967.6 2278 53.2
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1966.8 2207 52.6
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1966.8 2233 53.2
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1958.0 2333 51.9
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1954.9 2208 52.5
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1954.9 2233 53.0
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1947.9 2217 52.9
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1943.3 1717 63.1
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1936.4 2197 53.6
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1931.8 2176 53.5
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1926.0 2210 51.8
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1923.3 2211 51.4
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1916.7 2209 51.7
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1913.7 2203 51.5
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1911.0 2196 51.7
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1902.1 2206 51.6
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1902.1 2230 52.4
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1886.7 2224 50.8
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1884.4 2205 52.0
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1882.5 2200 52.4
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1880.9 2216 50.8
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1879.4 2212 51.1
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1872.1 2231 51.1
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1837.4 1927 55.5
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1764.2 2223 49.3
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1758.4 2153 51.2
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1755.7 2223 49.6
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1754.6 2118 51.4
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1751.9 2178 50.3
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1750.3 2146 51.1
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1688.3 2050 51.0
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1678.3 1398 62.8
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1646.3 2343 46.1
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1626.7 1436 62.1
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1622.1 1397 62.4
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1621.3 1395 62.4
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1467.2 2202 45.2
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1435.6 1459 58.7
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1377.5 2301 42.9
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1355.9 1252 58.6
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1204.5 2216 39.3
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1189.1 1354 53.9
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1181.4 1608 48.3
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 1.0e-294 1018.1 1236 51.4
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 9.8e-293 1011.5 1256 51.1
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 6.8e-278 962.2 816 62.6
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 5.4e-275 952.6 1385 46.9
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 1.3e-260 904.8 1112 46.9
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.5e-248 864.8 1308 43.9
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 6.1e-194 683.3 830 55.8
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.0e-176 625.2 485 66.2
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.4e-174 618.2 969 44.8
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 7.3e-171 606.7 2449 28.5
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.5e-168 599.0 1041 43.5
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 3.1e-161 574.7 942 45.4
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.9e-151 541.6 841 49.2
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 4.9e-151 540.8 841 49.2
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 3.3e-131 474.9 342 71.1
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.6e-130 472.6 426 57.5
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 6.2e-130 470.7 2269 27.1
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 9.0e-129 466.8 1382 28.9
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.0e-124 453.4 1121 35.2
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 4.5e-120 438.0 647 43.1
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 5.1e-116 424.5 901 36.6
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 3.8e-95 355.1 446 54.9
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 1.4e-89 336.7 280 58.2
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.5e-83 316.6 305 58.0
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.7e-82 313.2 215 71.6
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 3.5e-80 305.4 1896 24.4
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.5e-72 278.5 385 40.3
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 4.4e-67 261.9 334 44.6
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.6e-64 253.4 152 82.9
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 3.5e-64 252.3 329 44.1
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 3.6e-61 242.3 462 43.1
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 9.8e-59 234.2 465 42.8
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.7e-58 232.3 153 75.2
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 5.0e-55 221.9 196 74.0
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 2.2e-50 206.5 263 51.0
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 2.1e-48 199.9 153 61.4
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.5e-40 172.6 112 75.9
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 2.3e-39 169.9 179 56.4
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.2e-37 164.1 777 31.5
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.2e-35 157.5 226 42.9
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 1.6e-32 147.1 118 61.9
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 1.3e-31 144.1 115 62.6
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.4e-27 129.4 219 37.0
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 1.6e-24 120.6 127 55.9
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.9e-24 118.2 326 33.4
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.7e-23 114.8 106 62.3
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 7.4e-22 111.7 541 25.5
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 2.8e-21 109.8 79 69.6
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.0e-15 89.7 76 61.8
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 6.7e-15 88.6 133 35.3
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 3.1e-12 79.7 70 61.4
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 3.1e-12 79.7 115 44.3
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.2e-11 77.8 424 29.5
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 4.2e-09 69.3 199 28.6
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 9.3e-09 68.2 45 73.3
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.8e-07 63.9 337 30.0
SEGI_20776 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.0e-07 63.2 41 63.4
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 5.1e-07 62.4 99 40.4
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 1.9e-06 60.5 56 66.1
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 1.9e-06 60.5 99 39.4
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 1.9e-06 60.5 118 35.6


User provided reference genes

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