Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.6e-175 618.6 319 100.0
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 3.0e-110 402.5 318 70.8
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 6.2e-108 394.8 335 65.1
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 8.1e-108 394.4 313 69.0
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 7.6e-106 387.9 243 80.2
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 9.9e-106 387.5 334 67.7
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.4e-104 383.6 327 68.5
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.3e-102 377.1 319 66.1
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.1e-101 374.0 285 69.5
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 2.5e-101 372.9 273 73.3
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.6e-101 371.7 315 64.8
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 1.3e-100 370.5 327 63.9
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 2.1e-100 369.8 342 63.5
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 2.1e-100 369.8 233 79.4
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 4.8e-100 368.6 289 69.9
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 6.2e-100 368.2 272 72.8
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 1.1e-99 367.5 271 71.6
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 1.1e-99 367.5 271 70.8
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.4e-99 367.1 327 63.6
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.4e-99 366.3 233 78.5
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 5.3e-99 365.2 296 67.2
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 5.3e-99 365.2 298 65.1
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.2e-98 364.0 333 63.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.2e-98 364.0 300 67.0
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.2e-98 364.0 326 63.8
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 2.6e-98 362.8 291 67.0
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 2.6e-98 362.8 301 66.8
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 3.4e-98 362.5 326 62.6
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 5.8e-98 361.7 306 65.0
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 5.8e-98 361.7 278 69.8
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.0e-97 360.9 317 65.3
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.2e-97 359.8 298 64.8
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 8.4e-97 357.8 297 64.3
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 8.4e-97 357.8 323 61.9
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 1.9e-96 356.7 292 65.8
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 2.5e-96 356.3 236 77.1
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 2.5e-96 356.3 317 63.1
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 3.2e-96 355.9 301 65.1
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 5.5e-96 355.1 293 66.9
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 5.5e-96 355.1 277 68.6
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 7.1e-96 354.8 273 67.8
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 7.1e-96 354.8 327 59.9
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 9.3e-96 354.4 244 73.4
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 1.2e-95 354.0 313 62.9
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.7e-95 352.8 301 63.8
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 6.0e-95 351.7 329 61.1
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 7.9e-95 351.3 243 73.3
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.8e-94 350.1 243 74.9
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.8e-94 350.1 317 63.4
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 3.0e-94 349.4 290 64.5
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 3.0e-94 349.4 222 79.7
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 3.9e-94 349.0 289 64.7
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 6.7e-94 348.2 290 64.1
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 8.7e-94 347.8 324 62.7
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.1e-93 347.4 292 64.7
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 1.1e-93 347.4 322 59.3
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.1e-93 347.4 268 69.8
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.3e-93 345.9 339 61.1
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 5.7e-93 345.1 291 64.3
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 7.4e-93 344.7 286 66.1
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 7.4e-93 344.7 292 63.4
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 9.6e-93 344.4 325 61.8
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.3e-92 344.0 266 68.0
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.3e-92 344.0 306 61.8
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.6e-92 343.6 240 73.3
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 2.8e-92 342.8 250 72.0
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.1e-91 340.9 277 64.6
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 1.4e-91 340.5 324 59.6
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 3.1e-91 339.3 285 64.9
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 9.0e-91 337.8 299 64.5
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.2e-90 337.4 236 72.0
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.5e-90 337.0 279 66.3
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 2.6e-90 336.3 245 69.0
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 5.8e-90 335.1 239 70.3
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 1.0e-89 334.3 239 73.2
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.3e-89 334.0 278 65.5
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 3.8e-89 332.4 320 60.0
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 5.0e-89 332.0 313 59.7
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 8.4e-89 331.3 235 73.2
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-88 330.9 235 73.2
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.4e-88 330.5 271 66.8
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 2.5e-88 329.7 313 59.4
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 3.2e-88 329.3 235 74.0
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.2e-88 328.9 227 74.0
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.0e-86 324.3 260 66.9
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.0e-86 324.3 222 72.1
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.0e-86 324.3 273 62.6
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 8.7e-86 321.2 300 59.7
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 2.5e-85 319.7 324 58.0
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 5.7e-85 318.5 217 75.6
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 4.8e-84 315.5 239 68.2
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 2.4e-83 313.2 259 62.5
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.0e-82 310.1 219 72.1
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 7.7e-82 308.1 318 56.0
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.3e-81 307.4 320 55.6
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 7.2e-80 301.6 231 68.4
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 3.6e-79 299.3 214 71.0
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 8.8e-78 294.7 246 64.6
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.3e-76 290.8 312 55.1
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.2e-76 290.0 215 68.4
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.2e-71 274.2 231 63.6
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.6e-71 272.7 231 63.6
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.6e-69 266.5 204 68.1
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 7.4e-69 265.0 246 59.3
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 8.2e-68 261.5 325 48.3
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 4.1e-67 259.2 188 69.1
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 4.1e-67 259.2 188 69.1
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.2e-66 257.7 254 55.9
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 2.6e-66 256.5 292 49.3
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.0e-65 252.3 284 51.8
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 9.4e-64 248.1 284 51.8
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 3.3e-61 239.6 219 56.6
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 7.5e-61 238.4 213 62.4
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-60 237.7 207 61.4
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.6e-58 230.7 213 54.0
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 2.0e-58 230.3 219 59.8
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 7.7e-58 228.4 207 60.9
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 1.0e-57 228.0 229 58.5
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.5e-56 224.2 166 71.7
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.1e-55 220.3 235 54.5
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.1e-51 208.0 169 64.5
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.9e-36 156.8 120 70.0
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 2.4e-35 153.7 290 39.7
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.0e-33 146.0 188 48.9
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.1e-32 144.8 240 38.8
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-30 138.3 112 64.3
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 6.0e-26 122.5 209 33.5
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 6.8e-22 109.0 65 75.4
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 4.4e-21 106.3 70 70.0
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.1e-19 99.0 84 61.9
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 2.3e-14 84.0 47 80.9
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.3e-12 78.2 52 71.2
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 4.9e-12 76.3 82 52.4
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 4.1e-11 73.2 81 51.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.0e-09 68.6 36 88.9
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.5e-08 64.7 48 66.7
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 7.3e-08 62.4 50 60.0
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 9.6e-08 62.0 70 51.4
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 4.7e-07 59.7 45 64.4


User provided reference genes

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