Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.3e-249 865.1 449 100.0
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.8e-191 672.2 456 77.6
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 8.9e-185 650.6 460 74.3
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 6.3e-183 644.4 459 75.2
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.0e-181 639.4 459 75.4
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 2.0e-181 639.4 456 74.3
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.3e-180 636.0 460 73.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.1e-179 633.6 449 75.1
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 5.6e-179 631.3 445 76.4
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.8e-178 629.0 460 74.3
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.0e-177 627.1 459 73.2
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.8e-177 626.3 460 75.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.0e-177 625.5 459 73.0
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 3.0e-177 625.5 461 74.0
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 8.9e-177 624.0 458 71.8
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.0e-176 622.9 463 72.8
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.4e-176 622.1 457 72.6
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.4e-176 621.7 459 73.0
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 7.5e-176 620.9 457 74.6
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.2e-175 619.4 462 72.9
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.2e-175 619.4 458 75.3
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.4e-175 617.8 460 73.3
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 6.4e-175 617.8 464 71.6
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 4.1e-174 615.1 459 72.8
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 5.4e-174 614.8 461 72.7
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 5.4e-174 614.8 459 71.7
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.7e-173 612.5 459 70.8
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.0e-172 610.5 454 71.8
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.0e-172 609.0 462 71.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 3.0e-172 609.0 456 71.7
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.0e-172 609.0 454 71.6
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 5.0e-172 608.2 454 71.1
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.1e-171 607.1 459 71.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.1e-171 607.1 456 71.5
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.5e-171 606.7 460 71.5
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.5e-171 606.7 462 71.6
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 5.6e-171 604.7 459 71.2
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 7.3e-171 604.4 459 71.5
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.2e-170 603.6 461 70.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 2.8e-170 602.4 460 71.5
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.6e-170 602.1 459 70.4
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 4.7e-170 601.7 449 72.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.1e-169 599.0 456 71.1
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 4.0e-169 598.6 460 71.3
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 4.0e-169 598.6 456 71.5
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 8.9e-169 597.4 462 71.0
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.2e-168 597.0 459 69.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.5e-168 596.7 460 70.9
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 3.4e-168 595.5 459 70.8
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.4e-168 595.1 462 68.8
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 7.5e-168 594.3 457 70.2
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 9.8e-168 594.0 458 70.3
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 9.8e-168 594.0 456 70.4
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.3e-167 593.6 459 69.5
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 4.9e-167 591.7 457 70.5
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.4e-166 590.1 461 70.1
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.9e-166 589.7 464 69.4
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 4.1e-166 588.6 459 69.5
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.2e-165 587.0 456 69.5
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-165 587.0 456 69.5
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.2e-165 587.0 456 69.5
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.1e-165 586.3 465 69.9
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.5e-165 585.5 433 72.5
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 4.6e-165 585.1 463 69.1
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 6.0e-165 584.7 362 82.6
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 7.8e-165 584.3 456 70.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 7.8e-165 584.3 456 67.8
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.0e-164 583.9 456 70.0
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.7e-164 583.2 456 70.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 3.9e-164 582.0 449 70.2
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 6.6e-164 581.3 468 69.2
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.1e-163 580.5 464 69.4
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.1e-163 580.5 464 69.4
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 9.5e-163 577.4 456 68.6
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.6e-162 576.6 457 68.9
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 4.0e-161 572.0 456 68.4
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 4.0e-161 572.0 456 68.0
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.2e-160 570.5 457 68.1
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.4e-160 568.5 458 67.7
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.8e-160 568.2 456 67.8
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 9.2e-158 560.8 457 67.0
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.6e-157 560.1 464 68.1
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.5e-157 558.9 436 68.3
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 4.6e-157 558.5 415 70.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.0e-156 557.4 382 74.1
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 3.9e-156 555.4 428 70.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 6.6e-156 554.7 382 73.8
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.5e-155 553.5 459 64.9
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.5e-155 552.7 458 66.2
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 2.5e-155 552.7 458 65.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.6e-154 550.1 459 66.0
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.1e-153 547.4 457 65.9
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.1e-153 547.4 457 65.9
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 8.9e-153 544.3 471 65.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.6e-152 542.7 447 66.0
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 6.4e-151 538.1 451 66.1
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 2.7e-149 532.7 362 76.0
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 7.8e-149 531.2 363 74.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.7e-148 530.0 341 78.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.5e-147 526.9 403 69.5
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 3.0e-140 502.7 449 62.6
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-132 477.2 465 59.6
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.3e-131 472.2 308 78.9
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 4.0e-129 465.7 307 78.5
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 2.2e-127 459.9 311 76.2
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.8e-122 442.2 290 79.7
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 6.7e-116 421.8 282 78.0
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.2e-114 416.8 379 60.4
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.8e-113 413.7 390 59.2
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 6.9e-113 411.8 295 73.9
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 9.0e-113 411.4 386 59.1
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 2.0e-112 410.2 278 73.4
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.2e-111 406.8 383 59.5
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.8e-108 397.1 370 56.8
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 8.8e-108 394.8 410 52.7
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 5.7e-107 392.1 279 74.9
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.3e-95 354.4 323 61.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 6.5e-95 352.1 364 54.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.6e-93 347.4 374 53.2
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 6.7e-92 342.0 333 57.1
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-89 334.7 414 50.5
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 7.2e-86 322.0 361 50.7
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 9.4e-86 321.6 381 49.1
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.4e-84 317.8 236 72.0
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 8.3e-82 308.5 368 50.0
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.7e-80 303.5 392 46.2
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 7.7e-72 275.4 325 51.4
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 5.0e-55 219.5 338 45.0
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.9e-50 203.0 150 71.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.3e-46 189.9 215 53.0
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-36 158.7 115 68.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.4e-36 158.3 164 53.7
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 4.9e-34 149.8 137 57.7
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-31 141.7 171 48.5
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.3e-31 141.0 83 78.3
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.2e-29 132.9 113 62.8
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 5.8e-19 99.8 73 76.7
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-16 91.3 87 64.4
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 9.6e-14 82.4 75 54.7
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 9.0e-12 75.9 84 48.8
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.2e-08 65.5 169 32.0
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.9e-08 62.8 56 62.5


User provided reference genes

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