Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 2.9e-38 161.4 79 100.0
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 3.4e-15 84.7 80 57.5
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 2.2e-14 82.0 80 55.0
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 3.8e-14 81.3 80 55.0
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 1.1e-13 79.7 80 51.2
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 1.4e-13 79.3 80 53.8
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 1.4e-13 79.3 80 53.8
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 1.4e-13 79.3 80 53.8
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 1.4e-13 79.3 80 55.0
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 1.4e-13 79.3 80 55.0
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 3.2e-13 78.2 80 53.8
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 3.2e-13 78.2 80 53.8
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 3.2e-13 78.2 80 53.8
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 3.2e-13 78.2 80 53.8
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 3.2e-13 78.2 80 53.8
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 3.2e-13 78.2 80 52.5
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 3.2e-13 78.2 80 52.5
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 4.2e-13 77.8 80 53.8
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 5.4e-13 77.4 80 52.5
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 7.1e-13 77.0 80 52.5
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 7.1e-13 77.0 80 52.5
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 7.1e-13 77.0 80 51.2
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 7.1e-13 77.0 80 51.2
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 7.1e-13 77.0 80 51.2
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 7.1e-13 77.0 80 52.5
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 9.3e-13 76.6 80 53.8
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 9.3e-13 76.6 80 51.2
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 9.3e-13 76.6 80 53.8
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 1.2e-12 76.3 80 48.8
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 1.2e-12 76.3 80 52.5
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 1.2e-12 76.3 80 52.5
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 1.2e-12 76.3 80 51.2
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 1.2e-12 76.3 80 51.2
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 52.5
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 52.5
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 50.0
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 52.5
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 52.5
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 52.5
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 53.8
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 52.5
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 1.6e-12 75.9 80 53.8
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 2.1e-12 75.5 80 55.0
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 2.1e-12 75.5 80 52.5
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 2.7e-12 75.1 80 50.0
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 4.6e-12 74.3 80 51.2
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 4.6e-12 74.3 80 52.5
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 4.6e-12 74.3 80 51.2
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 4.6e-12 74.3 80 51.2
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 4.6e-12 74.3 80 50.0
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 6.0e-12 73.9 81 49.4
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 6.0e-12 73.9 80 51.2
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 7.9e-12 73.6 80 51.2
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 7.9e-12 73.6 80 50.0
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 7.9e-12 73.6 80 50.0
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 1.3e-11 72.8 80 50.0
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 1.8e-11 72.4 80 52.5
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 1.8e-11 72.4 80 51.2
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 1.8e-11 72.4 80 48.8
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 1.8e-11 72.4 80 50.0
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 1.8e-11 72.4 80 47.5
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 2.3e-11 72.0 80 51.2
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 2.3e-11 72.0 80 50.0
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 3.0e-11 71.6 80 47.5
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 3.0e-11 71.6 80 48.8
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 3.9e-11 71.2 80 51.2
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 3.9e-11 71.2 80 47.5
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 5.1e-11 70.9 80 50.0
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 5.1e-11 70.9 80 47.5
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 5.1e-11 70.9 80 50.0
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 5.1e-11 70.9 80 50.0
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 5.1e-11 70.9 80 50.0
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 5.1e-11 70.9 80 47.5
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 5.1e-11 70.9 80 50.0
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 6.7e-11 70.5 80 48.8
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 6.7e-11 70.5 80 48.8
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 6.7e-11 70.5 80 50.0
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 6.7e-11 70.5 80 50.0
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 6.7e-11 70.5 80 50.0
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 6.7e-11 70.5 80 46.2
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 1.1e-10 69.7 80 48.8
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 1.1e-10 69.7 80 48.8
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 1.1e-10 69.7 80 48.8
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 1.1e-10 69.7 80 51.2
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 1.5e-10 69.3 80 47.5
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 1.5e-10 69.3 80 47.5
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 1.5e-10 69.3 80 46.2
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 1.9e-10 68.9 80 46.2
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 1.9e-10 68.9 80 50.0
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 1.9e-10 68.9 80 50.0
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 1.9e-10 68.9 80 48.8
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 1.9e-10 68.9 80 48.8
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 1.9e-10 68.9 80 48.8
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 1.9e-10 68.9 80 47.5
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 1.9e-10 68.9 76 53.9
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 2.5e-10 68.6 80 51.2
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 2.5e-10 68.6 80 47.5
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 3.3e-10 68.2 80 47.5
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 3.3e-10 68.2 80 48.8
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 4.3e-10 67.8 76 50.0
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 5.6e-10 67.4 80 45.0
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 5.6e-10 67.4 80 46.2
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 7.4e-10 67.0 80 47.5
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 9.6e-10 66.6 80 47.5
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 9.6e-10 66.6 80 47.5
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 9.6e-10 66.6 80 47.5
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 9.6e-10 66.6 80 46.2
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 1.6e-09 65.9 80 46.2
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 1.6e-09 65.9 80 46.2
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 2.8e-09 65.1 80 46.2
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 2.8e-09 65.1 80 45.0
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 3.7e-09 64.7 80 47.5
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 4.8e-09 64.3 80 45.0
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 1.1e-08 63.2 80 46.2
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 1.1e-08 63.2 49 59.2
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 1.1e-08 63.2 80 43.8
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 2.4e-08 62.0 53 56.6
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 2.4e-08 62.0 53 54.7
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 4.0e-08 61.2 50 60.0
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 3.4e-07 58.2 76 46.1
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 4.5e-07 57.8 80 37.5
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 5.8e-07 57.4 76 44.7
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 9.9e-07 56.6 53 45.3
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.7e-06 55.8 80 36.2
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.7e-06 55.8 80 36.2
Lsat_1_v5_gn_1_5521 Lactuca sativa HOM05D003523 ORTHO05D233704 3.8e-06 54.7 48 60.4


User provided reference genes

Program Settings