Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.7e-103 379.4 205 100.0
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 6.2e-77 291.2 205 81.0
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.2e-66 256.1 202 73.8
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.1e-65 253.8 205 75.6
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 9.3e-65 250.8 204 75.5
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 6.9e-60 234.6 207 65.2
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.5e-59 233.4 207 65.2
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.0e-59 233.0 207 66.7
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 2.0e-59 233.0 207 66.7
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 2.0e-59 233.0 207 66.7
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.7e-58 229.9 203 67.0
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 2.2e-58 229.6 207 65.7
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 1.9e-57 226.5 207 63.8
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 3.2e-57 225.7 204 65.7
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 4.2e-57 225.3 204 64.7
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 4.2e-57 225.3 206 64.1
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 7.2e-57 224.6 208 64.9
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 7.2e-57 224.6 203 66.0
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 9.3e-57 224.2 204 64.7
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 1.2e-56 223.8 206 65.5
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 1.6e-56 223.4 207 65.2
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 2.7e-56 222.6 206 63.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 4.6e-56 221.9 199 65.8
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 1.0e-55 220.7 207 62.8
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.3e-55 220.3 207 65.2
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 1.8e-55 219.9 196 67.9
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.0e-55 219.2 207 65.2
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 5.1e-55 218.4 203 64.0
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 8.7e-55 217.6 207 62.8
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.5e-54 216.9 208 62.0
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 1.5e-54 216.9 206 63.1
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.9e-54 216.5 211 61.6
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 2.5e-54 216.1 204 62.7
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.5e-54 216.1 205 64.9
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 3.3e-54 215.7 201 66.2
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 4.3e-54 215.3 207 60.9
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 4.3e-54 215.3 201 64.2
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.4e-54 214.5 205 65.4
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 7.4e-54 214.5 211 61.6
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 7.4e-54 214.5 208 62.5
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 7.4e-54 214.5 201 64.7
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.6e-53 213.4 205 62.4
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.2e-53 213.0 205 64.9
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 2.2e-53 213.0 207 64.3
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 3.7e-53 212.2 208 63.5
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 4.8e-53 211.8 200 64.0
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.3e-53 211.5 205 63.9
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.3e-53 211.5 205 63.9
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 8.2e-53 211.1 204 62.7
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 8.2e-53 211.1 212 62.7
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 2.4e-52 209.5 204 64.2
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 3.1e-52 209.1 203 62.6
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 3.1e-52 209.1 211 62.1
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 4.1e-52 208.8 204 61.3
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 5.3e-52 208.4 206 64.1
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.3e-52 208.4 206 64.1
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 5.3e-52 208.4 212 62.7
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 6.9e-52 208.0 203 65.5
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 9.1e-52 207.6 208 63.5
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.5e-51 206.8 211 62.6
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 4.5e-51 205.3 209 62.2
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 5.9e-51 204.9 203 61.1
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 5.9e-51 204.9 206 60.2
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 7.7e-51 204.5 208 61.1
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 7.7e-51 204.5 202 62.4
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.7e-50 203.4 206 61.2
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.7e-50 203.4 202 62.9
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 3.8e-50 202.2 205 62.4
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 3.8e-50 202.2 211 61.1
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 5.0e-50 201.8 213 60.1
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 1.1e-49 200.7 207 62.3
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 3.2e-49 199.1 206 58.3
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 5.5e-49 198.4 205 59.5
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 7.2e-49 198.0 209 58.4
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 9.4e-49 197.6 207 60.4
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 9.4e-49 197.6 205 59.0
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.6e-48 196.8 206 56.3
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 2.1e-48 196.4 209 57.4
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 2.7e-48 196.1 211 57.3
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 3.6e-48 195.7 204 60.3
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 3.6e-48 195.7 209 56.9
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 3.6e-48 195.7 205 63.4
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 6.1e-48 194.9 203 57.1
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 7.9e-48 194.5 205 57.1
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.4e-47 193.7 199 62.8
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.0e-47 192.6 208 58.7
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.9e-47 192.2 201 61.7
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 3.9e-47 192.2 207 58.0
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 6.7e-47 191.4 205 57.6
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 8.8e-47 191.0 210 59.5
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 1.5e-46 190.3 204 58.3
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.5e-46 190.3 209 59.8
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.0e-46 189.9 208 58.7
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 4.4e-46 188.7 215 56.3
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 7.4e-46 188.0 199 57.3
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 9.7e-46 187.6 210 55.7
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 9.7e-46 187.6 215 57.2
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.3e-45 187.2 208 59.6
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.2e-45 186.4 202 58.9
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 2.8e-45 186.0 204 56.4
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 2.8e-45 186.0 204 56.4
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 3.7e-45 185.7 203 56.7
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 1.1e-44 184.1 206 55.3
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.4e-44 183.7 205 57.1
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 3.1e-44 182.6 206 55.8
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 4.1e-44 182.2 206 54.4
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 5.3e-44 181.8 209 54.1
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 5.3e-44 181.8 206 54.4
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 5.3e-44 181.8 206 54.4
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 6.9e-44 181.4 206 54.4
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 9.1e-44 181.0 205 56.6
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 1.5e-43 180.3 207 55.6
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 1.5e-43 180.3 207 55.6
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 2.6e-43 179.5 210 54.3
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 2.6e-43 179.5 206 56.8
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 2.6e-43 179.5 207 54.1
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 5.9e-43 178.3 204 56.4
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 1.0e-42 177.6 205 56.1
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 1.7e-42 176.8 207 55.1
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 2.2e-42 176.4 204 53.9
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 8.5e-42 174.5 207 57.0
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.4e-41 173.7 210 53.3
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 2.5e-41 172.9 207 54.1
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 7.2e-41 171.4 207 53.6
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.6e-40 170.2 207 53.1
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 3.6e-40 169.1 173 61.3
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 7.9e-40 167.9 207 53.6
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 6.7e-39 164.9 168 53.0
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 8.8e-39 164.5 201 51.2
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 4.8e-37 158.7 194 50.0
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 4.1e-36 155.6 205 53.2
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 2.6e-35 152.9 211 50.2
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.5e-35 152.5 155 57.4
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 3.8e-34 149.1 117 67.5
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.0e-34 148.7 146 54.8
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 6.5e-34 148.3 146 55.5
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 4.2e-33 145.6 172 48.3
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.2e-30 137.5 209 46.4
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 4.4e-30 135.6 202 48.0
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 9.7e-30 134.4 178 53.4
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 6.3e-29 131.7 178 51.7
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 2.4e-28 129.8 148 50.7
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 3.1e-28 129.4 209 43.5
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 4.1e-28 129.0 201 45.3
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.0e-26 124.4 121 64.5
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 3.8e-26 122.5 144 48.6
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 7.5e-22 108.2 141 48.2
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 7.5e-22 108.2 148 44.6
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.8e-20 103.6 130 52.3
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.0e-19 100.1 169 45.6
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 1.0e-18 97.8 136 47.8
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 2.3e-18 96.7 132 47.7
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.9e-18 96.3 134 50.0
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 2.5e-17 93.2 165 45.5
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 4.2e-17 92.4 82 67.1
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 8.8e-15 84.7 129 45.0
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.4e-14 82.8 115 49.6
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 3.7e-13 79.3 89 55.1
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.4e-12 76.6 139 41.7
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 1.3e-10 70.9 145 37.2
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 1.9e-09 67.0 123 36.6


User provided reference genes

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