Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 5.9e-64 247.3 118 100.0
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 2.4e-41 172.2 79 97.5
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 2.3e-39 165.6 79 89.9
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 3.9e-39 164.9 79 91.1
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 3.9e-39 164.9 79 91.1
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 6.6e-39 164.1 79 91.1
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 6.6e-39 164.1 79 91.1
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 1.1e-38 163.3 79 89.9
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.5e-38 162.9 85 87.1
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 1.9e-38 162.5 79 89.9
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 1.9e-38 162.5 77 92.2
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 3.3e-38 161.8 108 70.4
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 4.3e-38 161.4 79 88.6
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 4.3e-38 161.4 75 93.3
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.3e-38 161.4 94 77.7
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.3e-38 161.4 94 77.7
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 5.6e-38 161.0 80 90.0
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 5.6e-38 161.0 80 90.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 5.6e-38 161.0 80 90.0
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 7.3e-38 160.6 80 91.2
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 7.3e-38 160.6 80 90.0
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 9.5e-38 160.2 88 81.8
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 9.5e-38 160.2 79 92.4
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 1.2e-37 159.8 77 89.6
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 1.2e-37 159.8 80 90.0
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 1.6e-37 159.5 75 92.0
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 1.6e-37 159.5 84 85.7
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 2.1e-37 159.1 80 90.0
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 2.1e-37 159.1 80 88.8
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 2.1e-37 159.1 80 90.0
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 2.1e-37 159.1 79 91.1
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 2.1e-37 159.1 79 91.1
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 2.1e-37 159.1 79 86.1
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 2.8e-37 158.7 75 92.0
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 2.8e-37 158.7 75 92.0
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 2.8e-37 158.7 75 92.0
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 3.6e-37 158.3 77 90.9
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 4.7e-37 157.9 80 88.8
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 4.7e-37 157.9 80 88.8
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 6.2e-37 157.5 77 88.3
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 6.2e-37 157.5 79 88.6
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 6.2e-37 157.5 79 88.6
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 6.2e-37 157.5 80 88.8
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.1e-36 156.8 80 87.5
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.1e-36 156.8 80 86.2
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.4e-36 156.4 80 87.5
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.4e-36 156.4 80 87.5
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.4e-36 156.4 80 87.5
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.4e-36 156.4 74 91.9
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.4e-36 156.4 80 86.2
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 1.8e-36 156.0 86 80.2
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.8e-36 156.0 92 77.2
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.1e-36 155.2 78 83.3
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 3.1e-36 155.2 77 87.0
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 4.0e-36 154.8 81 86.4
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 4.0e-36 154.8 82 84.1
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 4.0e-36 154.8 79 84.8
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 4.0e-36 154.8 75 89.3
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 5.2e-36 154.5 76 86.8
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 5.2e-36 154.5 75 89.3
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 6.8e-36 154.1 75 88.0
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 8.9e-36 153.7 83 85.5
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 8.9e-36 153.7 80 87.5
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.2e-35 153.3 75 88.0
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.2e-35 153.3 74 90.5
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 1.5e-35 152.9 75 88.0
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 1.5e-35 152.9 79 86.1
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 2.0e-35 152.5 79 87.3
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 2.0e-35 152.5 79 86.1
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 2.0e-35 152.5 80 85.0
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 2.6e-35 152.1 78 84.6
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.6e-35 152.1 79 86.1
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 2.6e-35 152.1 75 88.0
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 2.6e-35 152.1 75 88.0
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.6e-35 152.1 80 83.8
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.6e-35 152.1 95 70.5
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.4e-35 151.8 78 82.1
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 3.4e-35 151.8 74 89.2
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 4.4e-35 151.4 80 83.8
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 5.8e-35 151.0 79 86.1
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 5.8e-35 151.0 78 84.6
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 7.6e-35 150.6 97 71.1
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 9.9e-35 150.2 75 85.3
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 9.9e-35 150.2 75 85.3
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 9.9e-35 150.2 75 86.7
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 9.9e-35 150.2 75 84.0
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 9.9e-35 150.2 82 82.9
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 1.7e-34 149.4 80 83.8
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.7e-34 149.4 75 85.3
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.7e-34 149.4 75 85.3
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 1.7e-34 149.4 75 85.3
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 2.2e-34 149.1 79 84.8
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 2.2e-34 149.1 77 83.1
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.2e-34 149.1 78 79.5
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 2.2e-34 149.1 75 85.3
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 2.9e-34 148.7 76 89.5
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 3.8e-34 148.3 75 84.0
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 3.8e-34 148.3 75 84.0
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 3.8e-34 148.3 75 84.0
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 4.9e-34 147.9 74 85.1
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 4.9e-34 147.9 75 84.0
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 6.4e-34 147.5 115 64.3
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.1e-33 146.7 80 82.5
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 1.9e-33 146.0 74 83.8
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 2.4e-33 145.6 75 81.3
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 3.2e-33 145.2 80 81.2
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 3.2e-33 145.2 80 81.2
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 3.2e-33 145.2 80 81.2
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 9.2e-33 143.7 75 81.3
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.3e-31 139.8 78 74.4
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.7e-31 139.4 76 76.3
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.7e-31 139.4 74 81.1
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 5.1e-31 137.9 74 77.0
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.9e-30 136.0 111 60.4
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 4.3e-30 134.8 74 79.7
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.2e-29 133.3 77 72.7
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.6e-29 132.9 76 73.7
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.6e-29 132.9 76 73.7
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.6e-29 132.9 62 93.5
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 2.8e-29 132.1 74 78.4
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.8e-29 132.1 74 78.4
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.8e-29 132.1 74 78.4
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.8e-29 132.1 74 78.4
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.8e-29 132.1 74 78.4
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 3.6e-29 131.7 76 73.7
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 6.2e-29 131.0 77 70.1
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 6.2e-29 131.0 77 70.1
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 4.0e-28 128.3 74 71.6
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 4.4e-27 124.8 79 73.4
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.9e-26 122.1 74 75.7
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.5e-24 115.2 80 72.5
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 4.6e-24 114.8 82 69.5
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 5.6e-22 107.8 79 54.4
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 3.1e-20 102.1 76 53.9
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 4.5e-19 98.2 63 61.9
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 4.5e-19 98.2 63 61.9
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 4.5e-19 98.2 63 61.9
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 5.8e-19 97.8 60 68.3
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 7.1e-17 90.9 57 63.2
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 2.1e-16 89.4 61 70.5
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 2.1e-16 89.4 80 62.5
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 3.0e-15 85.5 79 62.0
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 2.8e-13 79.0 79 43.0
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 4.9e-10 68.2 66 47.0
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 6.4e-10 67.8 80 51.2
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 5.1e-07 58.2 36 63.9


User provided reference genes

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