Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 1.5e-80 303.9 329 100.0
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 4.1e-70 269.2 330 94.2
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 9.1e-70 268.1 330 94.2
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 4.2e-67 259.2 329 91.2
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 2.7e-66 256.5 329 90.9
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 1.1e-56 224.6 329 80.9
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 1.8e-46 190.7 326 81.3
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 5.3e-46 189.1 326 68.1
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 1.2e-45 188.0 326 78.8
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 2.0e-45 187.2 326 82.2
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 3.5e-45 186.4 327 77.1
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 4.5e-45 186.0 326 79.1
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 4.5e-45 186.0 324 78.7
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 5.9e-45 185.7 328 80.8
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 1.7e-44 184.1 327 74.9
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 6.5e-44 182.2 326 77.3
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 8.5e-44 181.8 326 63.5
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 1.5e-43 181.0 319 79.0
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 1.9e-43 180.6 326 78.2
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 3.2e-43 179.9 327 75.2
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 3.2e-43 179.9 326 81.6
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 7.2e-43 178.7 326 78.5
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 9.4e-43 178.3 326 78.8
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 9.4e-43 178.3 325 79.4
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 1.2e-42 177.9 326 78.2
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 1.2e-42 177.9 326 77.6
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 1.6e-42 177.6 326 74.5
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 2.7e-42 176.8 326 77.9
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 6.1e-42 175.6 325 76.9
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 1.8e-41 174.1 326 70.9
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 2.3e-41 173.7 326 71.5
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 2.3e-41 173.7 326 77.6
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 3.0e-41 173.3 326 78.5
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 3.0e-41 173.3 326 78.2
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 5.2e-41 172.6 326 73.9
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 1.3e-39 167.9 325 76.9
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 1.3e-39 167.9 325 76.0
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 3.7e-39 166.4 326 76.1
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 3.7e-39 166.4 319 76.2
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 4.8e-39 166.0 326 72.1
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 6.3e-39 165.6 326 74.2
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 8.3e-39 165.2 318 75.8
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 8.3e-39 165.2 314 79.0
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 1.1e-38 164.9 326 75.8
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 1.4e-38 164.5 311 83.3
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 3.1e-38 163.3 326 77.6
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 5.4e-38 162.5 327 75.2
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 5.4e-38 162.5 326 69.9
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 5.4e-38 162.5 322 77.0
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 9.1e-38 161.8 326 73.0
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 9.1e-38 161.8 327 75.2
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.6e-37 161.0 295 61.0
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 1.6e-37 161.0 324 71.9
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 2.0e-37 160.6 326 73.9
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 2.7e-37 160.2 327 74.9
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 3.5e-37 159.8 326 73.6
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 4.5e-37 159.5 326 75.8
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 4.5e-37 159.5 326 75.8
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 4.5e-37 159.5 328 75.6
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 5.9e-37 159.1 325 72.9
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 7.7e-37 158.7 326 74.5
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 1.7e-36 157.5 337 76.6
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 2.3e-36 157.1 326 71.8
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 2.9e-36 156.8 323 77.4
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.9e-36 156.8 328 74.7
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 3.8e-36 156.4 325 75.7
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 6.6e-36 155.6 317 75.7
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 4.2e-35 152.9 326 73.3
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 4.2e-35 152.9 326 73.3
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 1.6e-34 151.0 315 76.2
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 2.1e-34 150.6 314 76.4
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 1.4e-33 147.9 311 68.8
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 4.0e-33 146.4 326 77.0
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 5.2e-33 146.0 326 71.5
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 6.8e-33 145.6 326 77.0
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 4.4e-32 142.9 96 70.8
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 1.3e-31 141.4 318 73.0
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 2.2e-31 140.6 330 65.2
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 2.8e-31 140.2 327 72.8
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 4.9e-31 139.4 307 76.2
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 7.0e-30 135.6 321 65.7
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 2.7e-29 133.7 329 68.7
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 2.7e-29 133.7 327 70.6
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 5.9e-29 132.5 325 64.3
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 1.3e-28 131.3 327 43.1
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 3.8e-28 129.8 329 62.9
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 3.8e-28 129.8 324 71.3
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 5.0e-28 129.4 328 70.4
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 6.6e-28 129.0 328 63.4
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 3.3e-27 126.7 297 77.1
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 4.3e-27 126.3 328 63.4
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 7.3e-27 125.6 276 84.1
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 6.1e-26 122.5 328 63.1
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.5e-24 117.9 79 69.6
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 4.4e-24 116.3 326 51.8
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 5.8e-24 115.9 328 61.9
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 7.5e-24 115.5 94 56.4
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 3.2e-22 110.2 300 75.0
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.2e-21 108.2 314 43.3
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 3.5e-21 106.7 331 66.5
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 4.6e-21 106.3 331 66.5
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 6.0e-21 105.9 331 66.2
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 6.0e-21 105.9 331 66.2
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 6.0e-21 105.9 75 58.7
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 4.7e-18 96.3 277 76.5
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.8e-17 94.4 277 76.9
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.3e-17 94.0 62 67.7
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.2e-16 91.7 67 62.7
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 4.1e-14 83.2 55 69.1
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 8.6e-12 75.5 59 59.3
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 9.5e-11 72.0 55 58.2
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 3.4e-08 63.5 86 37.2
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 5.8e-08 62.8 100 38.0
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 1.3e-07 61.6 61 45.9
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 3.7e-07 60.1 42 61.9
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 4.9e-07 59.7 44 56.8
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 8.3e-07 58.9 61 42.6
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 1.4e-06 58.2 61 41.0
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.4e-06 58.2 58 46.6
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 1.9e-06 57.8 60 41.7
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 2.4e-06 57.4 61 42.6
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 4.1e-06 56.6 58 44.8
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.1e-06 56.6 58 44.8
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.1e-06 56.6 58 44.8
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 5.4e-06 56.2 61 41.0
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 7.1e-06 55.8 57 42.1
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 7.1e-06 55.8 61 42.6


User provided reference genes

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