Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 1.7e-38 162.2 80 100.0
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 8.8e-19 96.7 79 65.8
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.6e-12 75.9 81 53.1
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 6.1e-12 73.9 78 53.8
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 8.0e-12 73.6 78 50.0
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.0e-11 73.2 78 51.3
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.8e-11 72.4 78 48.7
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.0e-11 71.6 81 46.9
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 3.0e-11 71.6 78 51.3
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.0e-11 71.6 81 46.9
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 5.2e-11 70.9 81 53.1
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 5.2e-11 70.9 81 53.1
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.7e-11 70.5 78 50.0
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.5e-10 69.3 78 48.7
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.0e-10 68.9 81 48.1
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 2.0e-10 68.9 81 49.4
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.0e-10 68.9 81 50.6
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.6e-10 68.6 78 51.3
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.6e-10 68.6 78 51.3
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 3.3e-10 68.2 78 52.6
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.3e-10 68.2 87 44.8
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.3e-10 68.2 78 51.3
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 4.4e-10 67.8 86 46.5
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.4e-10 67.8 79 49.4
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 4.4e-10 67.8 78 52.6
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 4.4e-10 67.8 78 52.6
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 7.5e-10 67.0 78 51.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 9.7e-10 66.6 78 50.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.3e-09 66.2 78 47.4
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.3e-09 66.2 81 48.1
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.3e-09 66.2 78 51.3
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.3e-09 66.2 83 45.8
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.3e-09 66.2 76 51.3
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.7e-09 65.9 81 49.4
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.2e-09 65.5 78 51.3
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 2.2e-09 65.5 76 46.1
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.8e-09 65.1 78 51.3
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 2.8e-09 65.1 78 50.0
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.8e-09 65.1 78 47.4
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.8e-09 65.1 78 50.0
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.8e-09 65.1 78 50.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.8e-09 65.1 78 50.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.8e-09 65.1 78 50.0
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 3.7e-09 64.7 81 45.7
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.7e-09 64.7 81 45.7
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 3.7e-09 64.7 78 51.3
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 4.8e-09 64.3 78 48.7
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 4.8e-09 64.3 78 50.0
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 4.8e-09 64.3 78 48.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 6.3e-09 63.9 78 48.7
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 6.3e-09 63.9 78 51.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 6.3e-09 63.9 76 48.7
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 6.3e-09 63.9 78 47.4
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 8.2e-09 63.5 76 51.3
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 8.2e-09 63.5 80 45.0
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 8.2e-09 63.5 78 48.7
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 8.2e-09 63.5 78 51.3
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.1e-08 63.2 78 44.9
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.1e-08 63.2 78 46.2
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.1e-08 63.2 78 46.2
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.4e-08 62.8 77 48.1
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.4e-08 62.8 78 47.4
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.4e-08 62.8 78 47.4
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.4e-08 62.8 80 46.2
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.8e-08 62.4 78 50.0
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.8e-08 62.4 76 43.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.4e-08 62.0 78 46.2
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.4e-08 62.0 78 47.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 2.4e-08 62.0 78 47.4
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.4e-08 62.0 80 48.8
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.1e-08 61.6 84 44.0
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.1e-08 61.6 78 47.4
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 3.1e-08 61.6 78 47.4
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 3.1e-08 61.6 78 47.4
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 4.1e-08 61.2 78 47.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 4.1e-08 61.2 78 46.2
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.1e-08 61.2 84 44.0
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 4.1e-08 61.2 78 46.2
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 4.1e-08 61.2 77 46.8
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.1e-08 61.2 78 47.4
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 7.0e-08 60.5 76 46.1
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 7.0e-08 60.5 79 44.3
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 7.0e-08 60.5 77 45.5
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 7.0e-08 60.5 77 46.8
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 7.0e-08 60.5 78 47.4
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 7.0e-08 60.5 78 46.2
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 7.0e-08 60.5 78 51.3
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 9.1e-08 60.1 79 45.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.1e-08 60.1 84 42.9
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 9.1e-08 60.1 84 41.7
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.1e-08 60.1 78 46.2
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.2e-07 59.7 79 44.3
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.2e-07 59.7 79 44.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.6e-07 59.3 81 45.7
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.6e-07 59.3 79 44.3
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.6e-07 59.3 78 46.2
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.6e-07 59.3 76 46.1
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.6e-07 59.3 78 46.2
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.0e-07 58.9 79 44.3
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 2.0e-07 58.9 79 44.3
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.0e-07 58.9 79 44.3
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.0e-07 58.9 78 46.2
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 2.7e-07 58.5 78 43.6
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.7e-07 58.5 77 45.5
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.5e-07 58.2 78 44.9
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 4.5e-07 57.8 84 42.9
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 4.5e-07 57.8 81 44.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.9e-07 57.4 78 46.2
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 7.7e-07 57.0 78 43.6
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 7.7e-07 57.0 78 43.6
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 7.7e-07 57.0 78 46.2
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 7.7e-07 57.0 78 46.2
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 7.7e-07 57.0 76 42.1
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 7.7e-07 57.0 75 42.7
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 7.7e-07 57.0 81 44.4
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.0e-06 56.6 77 46.8
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 1.7e-06 55.8 76 46.1
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.7e-06 55.8 78 44.9
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.7e-06 55.8 78 42.3
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.7e-06 55.8 78 43.6
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 2.2e-06 55.5 78 46.2
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 2.9e-06 55.1 76 43.4
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 3.8e-06 54.7 75 44.0
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 6.5e-06 53.9 78 39.7


User provided reference genes

Program Settings