Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 0.0e+00 1086.2 542 100.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.1e-236 822.4 539 75.1
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.9e-230 801.2 530 74.9
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 9.2e-229 797.0 539 73.3
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 6.9e-216 754.2 551 68.6
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 2.1e-148 530.0 547 47.9
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 9.8e-146 521.2 549 48.3
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.1e-144 517.7 547 48.8
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 5.9e-143 511.9 549 47.5
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 7.7e-143 511.5 545 48.1
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 8.6e-142 508.1 552 47.6
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.5e-141 507.3 551 48.8
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.3e-141 505.0 547 48.1
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 5.2e-139 498.8 550 48.5
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 5.7e-138 495.4 543 48.6
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 5.7e-138 495.4 547 45.7
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 9.8e-138 494.6 556 46.8
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.2e-137 493.4 554 46.9
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.9e-137 493.0 549 48.5
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 6.4e-137 491.9 546 48.2
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 8.3e-137 491.5 549 48.6
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 8.3e-137 491.5 547 47.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.1e-136 491.1 545 47.9
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-136 490.7 546 48.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 2.4e-136 490.0 544 47.2
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.2e-136 489.6 549 48.6
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.4e-136 488.8 543 48.1
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 9.2e-136 488.0 564 45.0
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 4.6e-135 485.7 544 47.1
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-134 484.2 538 47.2
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 5.0e-134 482.3 545 46.8
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.0e-134 482.3 538 47.0
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 6.6e-134 481.9 549 47.2
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.1e-133 481.1 543 46.0
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 3.3e-133 479.6 545 47.3
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 7.3e-133 478.4 548 47.1
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 7.3e-133 478.4 551 45.9
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 6.2e-132 475.3 548 44.7
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 8.0e-132 474.9 559 46.3
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 8.0e-132 474.9 551 47.7
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 8.0e-132 474.9 550 45.8
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 3.1e-131 473.0 544 46.0
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.0e-130 470.3 555 45.4
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 2.6e-130 469.9 530 45.7
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 4.4e-130 469.2 543 45.9
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 2.2e-129 466.8 547 44.8
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.2e-129 466.8 540 45.7
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 2.9e-129 466.5 559 45.6
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 3.7e-129 466.1 551 45.2
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 3.7e-129 466.1 560 45.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 4.9e-129 465.7 541 45.1
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 4.9e-129 465.7 549 46.4
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.1e-128 464.5 548 44.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.9e-128 463.8 562 44.8
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.9e-128 463.8 546 45.6
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 7.0e-128 461.8 551 45.2
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.2e-127 461.1 556 45.3
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.2e-127 461.1 550 44.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.2e-127 461.1 545 45.0
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 2.0e-127 460.3 550 44.7
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.7e-127 459.9 552 45.5
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 2.5e-125 453.4 544 45.0
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 7.3e-125 451.8 552 44.9
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 9.5e-125 451.4 547 46.3
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.1e-123 448.0 540 44.4
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.4e-122 443.0 552 44.2
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 3.4e-122 443.0 548 44.3
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.7e-121 440.7 548 43.6
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 2.2e-121 440.3 535 44.7
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 2.4e-120 436.8 538 42.0
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 4.1e-120 436.0 538 44.2
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.1e-120 436.0 563 43.3
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.6e-119 434.1 545 42.2
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.0e-118 431.4 563 42.3
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.3e-118 430.3 556 43.7
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.9e-117 427.2 554 43.0
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 4.7e-116 422.5 550 41.6
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 8.1e-116 421.8 547 41.7
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 3.1e-115 419.9 546 40.8
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.6e-114 416.8 549 41.9
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 4.4e-114 416.0 548 41.1
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 5.8e-114 415.6 551 42.6
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 7.6e-114 415.2 547 40.6
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.1e-111 407.1 471 45.9
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.3e-110 403.7 550 44.0
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.9e-110 402.9 538 40.1
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 8.6e-110 401.7 538 39.4
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.9e-109 400.6 457 46.8
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-107 394.8 537 38.9
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.1e-107 394.8 537 38.9
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.1e-107 394.8 537 38.9
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 6.4e-105 385.6 544 40.3
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 9.3e-104 381.7 543 39.0
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 3.5e-103 379.8 534 39.3
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.0e-98 364.0 564 36.2
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.6e-93 345.9 602 37.2
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.6e-92 344.4 551 37.9
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 2.8e-92 343.6 539 39.0
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 5.3e-91 339.3 467 40.0
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.0e-90 337.4 427 44.7
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.2e-88 330.1 539 37.1
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.6e-85 319.3 520 37.9
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.0e-83 313.2 584 34.8
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.6e-82 310.5 619 33.4
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 9.3e-80 302.0 300 48.0
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 6.0e-79 299.3 498 36.9
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 1.4e-75 288.1 284 51.1
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 9.0e-75 285.4 431 37.6
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.8e-73 280.0 303 49.2
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.8e-68 263.1 228 54.4
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 8.2e-68 262.3 347 43.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 9.4e-64 248.8 417 38.4
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 3.3e-61 240.4 553 32.0
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 2.2e-60 237.7 570 31.8
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.0e-57 228.8 328 40.2
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 4.7e-55 219.9 560 29.3
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 3.6e-47 193.7 561 28.0
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 9.7e-45 185.7 197 43.1
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 9.1e-43 179.1 378 32.0
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 2.0e-42 177.9 560 27.1
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.6e-39 168.3 314 34.7
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.3e-33 148.7 311 28.6
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.7e-25 121.7 137 46.7
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.7e-20 105.1 105 40.0
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.1e-19 102.4 239 32.6
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.4e-19 101.3 97 44.3
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 7.0e-19 99.8 291 26.1
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 5.9e-18 96.7 143 43.4
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 2.5e-16 91.3 110 40.0
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 2.5e-16 91.3 217 32.7
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.1e-14 84.3 113 40.7
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.2e-14 83.6 87 43.7
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.0e-13 81.6 69 59.4
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.0e-09 69.3 181 29.3
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-09 67.8 193 28.5
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 8.6e-09 66.2 207 22.7
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 8.6e-09 66.2 128 31.2
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.5e-08 64.7 64 40.6
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 3.3e-08 64.3 62 40.3
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.3e-08 63.9 61 39.3
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-07 62.4 82 31.7
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.6e-07 62.0 155 31.0
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.1e-06 59.3 60 50.0
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 1.4e-06 58.9 272 22.4
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 2.3e-06 58.2 264 23.1
TWI77G0498 Tripterygium wilfordii HOM05D001573 ORTHO05D001660 6.8e-06 56.6 315 24.1
Rhsim07G0253500 Rhododendron simsii HOM05D001573 ORTHO05D001660 8.9e-06 56.2 310 22.6


User provided reference genes

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