Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 1.1e-185 653.7 461 100.0
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 2.5e-118 429.9 360 70.0
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 4.3e-102 375.9 350 70.6
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.1e-97 361.3 265 77.0
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.0e-95 354.8 359 63.5
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.3e-95 354.4 362 62.7
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.9e-95 352.8 371 62.8
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.3e-94 349.4 363 62.0
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 4.8e-93 345.9 360 58.9
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 6.9e-92 342.0 359 63.0
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 8.5e-90 335.1 220 80.9
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.1e-89 334.7 384 58.9
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.9e-89 334.0 363 60.1
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.2e-88 331.3 360 63.1
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.6e-88 329.3 358 61.2
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 3.9e-87 326.2 363 59.8
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 6.7e-87 325.5 360 59.2
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 2.5e-86 323.6 361 61.5
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 2.8e-85 320.1 368 59.5
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.4e-84 317.0 370 54.1
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 3.1e-84 316.6 384 58.6
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 3.4e-83 313.2 375 60.0
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 4.5e-83 312.8 361 59.8
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 4.5e-83 312.8 375 56.5
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.7e-82 310.8 328 60.7
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 3.8e-82 309.7 368 60.1
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.4e-81 307.8 362 59.1
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 3.6e-80 303.1 368 58.2
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 6.1e-80 302.4 361 60.1
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 2.3e-79 300.4 375 58.4
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 2.3e-79 300.4 369 61.2
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 6.7e-79 298.9 369 51.2
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 3.3e-78 296.6 388 54.9
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.7e-77 294.3 372 60.2
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 2.8e-77 293.5 366 59.0
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 3.7e-77 293.1 376 54.5
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 8.2e-77 292.0 366 59.3
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 1.4e-76 291.2 363 57.6
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 3.1e-76 290.0 374 58.0
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 3.1e-76 290.0 374 57.0
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 3.1e-76 290.0 377 57.3
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 6.9e-76 288.9 361 58.7
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 1.2e-75 288.1 366 52.5
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.2e-75 288.1 359 58.5
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 1.0e-74 285.0 359 55.7
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 2.9e-74 283.5 268 64.2
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 8.5e-74 282.0 383 55.6
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 8.5e-74 282.0 370 50.5
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 2.5e-73 280.4 390 51.5
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 5.5e-73 279.3 363 59.8
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 5.5e-73 279.3 396 52.8
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 9.4e-73 278.5 385 59.0
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.2e-72 278.1 386 56.0
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.6e-72 277.7 382 54.7
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 4.7e-72 276.2 370 53.8
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.4e-71 274.6 373 59.8
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 1.4e-71 274.6 326 57.7
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.4e-71 274.6 371 46.1
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 2.3e-71 273.9 380 52.6
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 3.0e-71 273.5 273 60.1
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 2.6e-70 270.4 376 54.0
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 4.4e-70 269.6 412 50.0
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 5.7e-70 269.2 365 54.5
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 9.7e-70 268.5 390 52.6
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 9.7e-70 268.5 413 54.2
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.2e-69 267.3 371 52.8
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.7e-69 266.5 368 55.4
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 2.4e-68 263.8 372 50.5
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 4.1e-68 263.1 393 52.9
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 9.1e-68 261.9 365 46.8
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 1.6e-67 261.2 375 50.4
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 2.0e-67 260.8 363 53.4
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.0e-67 260.8 376 56.1
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 5.0e-66 256.1 373 56.8
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 5.0e-66 256.1 377 56.5
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 8.5e-66 255.4 376 54.8
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 8.5e-66 255.4 371 55.0
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.1e-65 255.0 372 49.7
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.5e-65 254.6 271 56.8
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.5e-65 254.6 338 55.3
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.5e-65 254.6 365 46.8
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.9e-65 254.2 363 55.1
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 2.5e-65 253.8 370 51.9
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.5e-65 253.8 365 55.1
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.2e-65 253.1 369 57.2
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 5.5e-65 252.7 376 52.7
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 7.2e-65 252.3 383 55.4
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 7.2e-65 252.3 367 57.8
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 7.2e-65 252.3 367 57.8
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 1.2e-64 251.5 373 56.0
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 4.7e-64 249.6 359 52.6
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 6.1e-64 249.2 401 48.1
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 1.0e-63 248.4 371 50.1
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 2.3e-63 247.3 372 49.2
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 2.3e-63 247.3 391 43.5
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 3.0e-63 246.9 402 51.2
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 4.0e-63 246.5 363 51.8
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 8.8e-63 245.4 374 49.5
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 8.8e-63 245.4 374 49.7
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 8.8e-63 245.4 364 52.2
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.5e-62 244.6 372 47.6
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 2.6e-62 243.8 376 50.0
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 3.3e-62 243.4 169 72.2
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 4.4e-62 243.0 365 47.7
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 1.7e-61 241.1 374 50.5
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 1.7e-61 241.1 367 53.1
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 2.2e-61 240.7 366 52.2
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 2.8e-61 240.4 237 59.5
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 4.8e-61 239.6 375 54.4
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 8.2e-61 238.8 363 47.4
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 1.4e-60 238.0 373 54.4
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.8e-60 237.7 417 48.9
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.2e-59 235.0 371 49.9
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 2.0e-59 234.2 182 70.3
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 4.5e-59 233.0 366 54.9
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.7e-58 231.1 372 55.1
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.7e-58 231.1 372 55.1
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.2e-58 230.7 351 53.0
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 2.9e-58 230.3 368 50.0
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.9e-57 227.6 367 49.3
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.9e-57 227.6 373 53.6
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 9.4e-57 225.3 385 49.4
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 3.6e-56 223.4 339 48.1
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 8.0e-56 222.2 263 56.7
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.0e-55 221.9 333 52.0
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.8e-55 221.1 331 47.1
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 1.5e-54 218.0 361 47.4
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.6e-54 217.2 366 50.0
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 2.2e-53 214.2 390 44.1
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 4.8e-53 213.0 367 49.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 1.2e-51 208.4 252 61.1
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.2e-51 208.4 363 48.2
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 1.6e-51 208.0 166 67.5
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.7e-50 204.5 339 45.7
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 8.6e-50 202.2 119 78.2
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.5e-49 200.7 157 63.7
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 2.8e-45 187.2 318 45.3
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 5.0e-42 176.4 253 55.7
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.9e-41 174.5 357 38.4
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 3.4e-38 163.7 345 36.8
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 1.0e-34 152.1 263 43.7
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 5.2e-31 139.8 297 44.4
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.0e-30 137.9 94 72.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 2.3e-23 114.4 158 53.2
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 2.9e-21 107.5 213 43.7
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 1.4e-20 105.1 272 35.7
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 3.2e-20 104.0 148 51.4
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 8.6e-18 95.9 120 38.3
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 4.3e-17 93.6 167 44.3
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 1.2e-14 85.5 239 43.1
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 3.9e-10 70.5 305 29.5
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 9.6e-09 65.9 99 39.4
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 4.7e-08 63.5 93 40.9
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 2.4e-07 61.2 92 38.0
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 3.1e-07 60.8 102 37.3
Gohir.A11G322600 Gossypium hirsutum HOM05D000428 ORTHO05D000582 4.0e-07 60.5 99 35.4
Gohir.D11G341700 Gossypium hirsutum HOM05D000428 ORTHO05D000582 4.0e-07 60.5 99 35.4
Gorai.007G371700 Gossypium raimondii HOM05D000428 ORTHO05D000582 4.0e-07 60.5 99 35.4
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 5.2e-07 60.1 92 40.2
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 5.2e-07 60.1 93 39.8
CANSAT80G2191 Cannabis sativa HOM05D000428 ORTHO05D000582 2.0e-06 58.2 97 32.0
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 2.0e-06 58.2 96 39.6
Aqoxy1G01023 Aquilegia oxysepala HOM05D000428 ORTHO05D000582 2.6e-06 57.8 99 31.3
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 3.4e-06 57.4 31 74.2
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 4.4e-06 57.0 96 37.5
Gohir.D07G112100 Gossypium hirsutum HOM05D005264 ORTHO05D005428 5.8e-06 56.6 120 35.8
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 5.8e-06 56.6 32 68.8
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 7.6e-06 56.2 31 67.7
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 7.6e-06 56.2 120 34.2
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 9.9e-06 55.8 32 65.6
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 9.9e-06 55.8 32 65.6
Sc02g0001300 Simmondsia chinensis HOM05D000428 ORTHO05D000582 9.9e-06 55.8 99 35.4


User provided reference genes

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