Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 6.8e-287 989.9 493 100.0
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 9.7e-201 703.7 495 72.7
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 1.7e-200 703.0 495 72.9
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 1.0e-197 693.7 493 72.0
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 2.1e-179 632.9 483 68.3
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 1.3e-168 597.0 492 61.0
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 2.0e-166 589.7 494 60.3
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 1.3e-165 587.0 492 61.4
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 3.8e-165 585.5 494 60.7
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 8.6e-165 584.3 494 60.5
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 1.1e-164 583.9 494 60.5
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 1.2e-163 580.5 494 59.3
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 1.6e-163 580.1 494 59.9
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 3.6e-163 578.9 492 58.9
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 6.1e-163 578.2 493 59.4
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 3.0e-162 575.9 515 57.7
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 4.0e-162 575.5 455 61.5
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 1.5e-161 573.5 492 59.3
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 2.0e-161 573.2 494 59.3
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 3.4e-161 572.4 494 60.1
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 5.7e-161 571.6 494 58.9
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 7.5e-161 571.2 492 59.1
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 9.8e-161 570.9 492 58.7
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 2.2e-160 569.7 491 60.9
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 3.7e-160 568.9 477 61.2
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 6.3e-160 568.2 492 58.1
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 1.1e-159 567.4 496 59.7
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 1.4e-159 567.0 492 57.1
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 1.4e-159 567.0 493 58.8
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 4.1e-159 565.5 493 59.0
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 5.4e-159 565.1 492 58.1
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 7.0e-159 564.7 492 56.9
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 4.5e-158 562.0 492 57.9
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 4.5e-158 562.0 499 58.9
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 7.8e-158 561.2 494 58.5
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 1.3e-157 560.5 495 57.8
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.3e-157 560.5 495 57.8
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 1.7e-157 560.1 485 59.0
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 3.8e-157 558.9 497 58.4
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 6.6e-157 558.1 495 57.6
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 8.6e-157 557.8 493 58.4
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 1.1e-156 557.4 488 58.4
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 1.1e-156 557.4 488 58.4
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 1.1e-156 557.4 488 58.4
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 1.9e-156 556.6 495 58.4
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 3.3e-156 555.8 496 57.1
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 9.5e-156 554.3 488 58.0
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 9.5e-156 554.3 490 57.8
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 2.8e-155 552.7 497 57.7
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 3.6e-155 552.4 499 57.7
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 3.6e-155 552.4 492 57.5
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 1.0e-154 550.8 495 56.6
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 1.4e-154 550.4 500 55.8
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 1.4e-154 550.4 491 57.4
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 1.8e-154 550.1 491 57.0
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 2.3e-154 549.7 490 57.8
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 4.0e-154 548.9 490 57.6
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 5.2e-154 548.5 499 56.9
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 6.8e-154 548.1 487 57.1
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 8.9e-154 547.7 484 58.5
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 8.9e-154 547.7 494 57.1
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 8.9e-154 547.7 490 57.3
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 2.6e-153 546.2 490 57.3
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 5.8e-153 545.0 481 57.8
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 7.5e-153 544.7 491 57.4
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 2.2e-152 543.1 487 57.5
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 2.9e-152 542.7 492 56.1
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 3.7e-152 542.3 477 58.1
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 4.9e-152 542.0 441 62.1
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 1.1e-151 540.8 493 56.8
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 9.2e-151 537.7 489 56.6
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 2.7e-150 536.2 438 58.9
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 1.1e-148 530.8 549 53.9
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 1.2e-147 527.3 420 61.0
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 1.8e-146 523.5 419 60.4
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 4.9e-144 515.4 525 53.0
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 1.9e-143 513.5 447 57.5
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 2.1e-142 510.0 447 57.3
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 4.6e-142 508.8 446 57.4
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 1.5e-140 503.8 452 53.8
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 9.5e-140 501.1 427 59.7
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 1.1e-138 497.7 563 48.3
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 5.2e-138 495.4 463 56.4
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 2.0e-137 493.4 493 52.5
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 7.1e-135 485.0 494 52.6
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 5.1e-133 478.8 445 54.8
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 5.6e-132 475.3 400 58.8
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 6.0e-126 455.3 401 59.4
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 5.6e-124 448.7 405 54.6
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 6.2e-115 418.7 509 47.0
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 4.5e-113 412.5 450 48.9
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 9.3e-103 378.3 465 45.8
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 1.2e-102 377.9 368 56.2
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 4.3e-100 369.4 432 44.9
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 9.6e-100 368.2 384 54.7
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 4.8e-91 339.3 499 39.9
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 5.3e-90 335.9 206 73.3
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 2.5e-87 327.0 251 64.1
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 2.2e-83 313.9 325 51.4
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 1.8e-82 310.8 234 62.4
Actinidia02144 Actinidia chinensis HOM05D005983 ORTHO05D007438 5.5e-79 299.3 177 76.8
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 1.3e-72 278.1 261 53.6
Actinidia02145 Actinidia chinensis HOM05D005983 ORTHO05D007438 5.3e-66 256.1 273 52.4
Lj2A220G36 Lonicera japonica HOM05D005983 ORTHO05D007438 1.8e-58 231.1 142 76.8
Haze_01069 Corylus avellana HOM05D005983 ORTHO05D007438 1.5e-52 211.5 142 74.6
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 7.5e-52 209.1 227 50.2
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 7.5e-52 209.1 227 50.2
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 7.5e-52 209.1 227 50.2
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 2.8e-51 207.2 244 48.4
Glyma.11G034500 Glycine max HOM05D005983 ORTHO05D007438 3.7e-51 206.8 140 72.1
vmacro00191 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 4.1e-42 176.8 119 68.1
Actinidia14414 Actinidia chinensis HOM05D005983 ORTHO05D007438 2.7e-41 174.1 236 44.9
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 2.7e-41 174.1 384 31.5
PRCOL_00002495 Prasinoderma coloniale HOM05D000251 ORTHO05D007438 9.2e-34 149.1 310 33.2
CDE04G0678 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 3.5e-33 147.1 211 43.6
SEGI_17682 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 2.3e-32 144.4 119 55.5
C02p21550 Brassica napus HOM05D005983 ORTHO05D007438 1.6e-30 138.3 188 41.0
BcaC03g14715 Brassica carinata HOM05D005983 ORTHO05D007438 2.1e-30 137.9 171 42.7
BolC2t08295H Brassica oleracea HOM05D005983 ORTHO05D007438 2.1e-30 137.9 171 42.7
FAN13G0557 Fragaria x ananassa HOM05D005983 ORTHO05D007438 9.8e-28 129.0 95 66.3
BcaC07g42540 Brassica carinata HOM05D005983 ORTHO05D007438 1.0e-24 119.0 114 51.8
BraA08t34844Z Brassica rapa HOM05D005983 ORTHO05D007438 3.9e-24 117.1 169 39.1
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 8.9e-21 105.9 279 28.0
SEGI_40726 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 2.1e-17 94.7 84 50.0
SEGI_40136 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 3.5e-17 94.0 99 48.5
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 1.9e-15 88.2 258 26.0
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 1.8e-13 81.6 300 26.3
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 5.8e-12 76.6 277 28.5
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 2.9e-11 74.3 277 27.4
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.4e-11 73.2 277 27.1
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 6.4e-11 73.2 266 27.8
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 1.1e-10 72.4 294 26.2
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 1.4e-10 72.0 273 27.5
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.9e-10 71.6 277 26.7
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 2.4e-10 71.2 282 24.8
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 2.4e-10 71.2 281 27.4
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 3.2e-10 70.9 280 26.4
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 3.2e-10 70.9 276 26.8
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 4.2e-10 70.5 294 25.9
RcHm_v2.0_Chr7g0203671 Rosa chinensis HOM05D005983 ORTHO05D007438 4.2e-10 70.5 156 32.7
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 5.4e-10 70.1 276 25.7
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 5.4e-10 70.1 277 26.7
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 5.4e-10 70.1 277 26.7
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 5.4e-10 70.1 293 27.0
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 7.1e-10 69.7 277 26.7
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 7.1e-10 69.7 277 26.7
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 7.1e-10 69.7 277 26.7
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 7.1e-10 69.7 277 27.1
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 1.2e-09 68.9 277 26.4
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 1.2e-09 68.9 276 25.7
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 1.6e-09 68.6 276 27.5
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.6e-09 68.6 276 27.9
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.6e-09 68.6 276 27.5
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.1e-09 68.2 276 27.5
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 3.5e-09 67.4 284 27.1
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 4.6e-09 67.0 267 27.0
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 6.0e-09 66.6 297 26.6
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 7.8e-09 66.2 279 26.2
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 1.3e-08 65.5 267 25.5
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 3.0e-08 64.3 208 27.9
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 3.9e-08 63.9 229 26.2
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 6.6e-08 63.2 227 26.9
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 8.7e-08 62.8 208 26.9
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 1.1e-07 62.4 294 24.8
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 1.5e-07 62.0 209 25.4
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 1.5e-07 62.0 208 27.4
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 1.5e-07 62.0 209 25.4
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 1.5e-07 62.0 209 25.4
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 3.3e-07 60.8 209 26.3
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 4.3e-07 60.5 185 24.9
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 4.3e-07 60.5 209 27.3
Lsat_1_v5_gn_4_25380 Lactuca sativa HOM05D005983 ORTHO05D007438 5.6e-07 60.1 48 60.4
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 5.6e-07 60.1 209 25.4
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 7.3e-07 59.7 210 27.6
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.6e-06 58.5 210 27.1
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.6e-06 58.5 210 27.1
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 2.8e-06 57.8 209 24.4
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 3.6e-06 57.4 144 31.9
SHI02535 Sapria himalayana HOM05D005983 ORTHO05D007438 8.1e-06 56.2 60 50.0


User provided reference genes

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