Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac3g06887 Beta vulgaris HOM05D003128 ORTHO05D004333 2.4e-60 235.3 119 100.0
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 9.6e-38 160.2 91 92.3
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 2.1e-37 159.1 91 91.2
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 5.8e-35 151.0 91 83.5
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 5.8e-35 151.0 91 83.5
MBI01_g28993_MAGBIO Magnolia biondii HOM05D003128 ORTHO05D004333 1.0e-34 150.2 104 75.0
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 1.3e-34 149.8 91 81.3
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 1.3e-34 149.8 91 82.4
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 1.3e-34 149.8 91 82.4
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 1.3e-34 149.8 91 84.6
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.3e-34 149.8 91 84.6
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.7e-34 149.4 91 81.3
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 1.7e-34 149.4 91 82.4
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.2e-34 149.1 91 80.2
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 2.2e-34 149.1 91 85.7
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 2.9e-34 148.7 91 84.6
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 3.8e-34 148.3 91 81.3
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 4.9e-34 147.9 91 81.3
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 6.5e-34 147.5 91 81.3
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 6.5e-34 147.5 91 82.4
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 6.5e-34 147.5 91 83.5
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 8.4e-34 147.1 91 82.4
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 1.4e-33 146.4 91 82.4
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 1.4e-33 146.4 91 82.4
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 1.4e-33 146.4 91 82.4
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 1.9e-33 146.0 98 77.6
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 1.9e-33 146.0 91 82.4
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 2.5e-33 145.6 91 80.2
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 2.5e-33 145.6 91 80.2
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 81.3
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 80.2
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 80.2
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 80.2
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 80.2
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 80.2
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 80.2
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 80.2
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 4.2e-33 144.8 91 81.3
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 5.5e-33 144.4 91 81.3
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 5.5e-33 144.4 91 79.1
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 5.5e-33 144.4 91 82.4
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 5.5e-33 144.4 91 81.3
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 5.5e-33 144.4 90 82.2
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 5.5e-33 144.4 91 81.3
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 5.5e-33 144.4 91 80.2
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 7.1e-33 144.1 91 80.2
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 9.3e-33 143.7 90 80.0
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 9.3e-33 143.7 91 81.3
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.6e-32 142.9 90 80.0
Manes.12G144101 Manihot esculenta HOM05D003128 ORTHO05D004333 2.1e-32 142.5 91 80.2
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 2.1e-32 142.5 91 79.1
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 3.5e-32 141.7 91 79.1
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 4.6e-32 141.4 91 79.1
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 4.6e-32 141.4 91 78.0
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.6e-32 141.4 91 78.0
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.6e-32 141.4 91 78.0
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.6e-32 141.4 91 78.0
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 6.0e-32 141.0 91 76.9
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 6.0e-32 141.0 91 80.2
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 7.9e-32 140.6 91 81.3
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 7.9e-32 140.6 91 78.0
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 7.9e-32 140.6 91 78.0
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 1.3e-31 139.8 91 78.0
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.3e-31 139.8 91 78.0
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.8e-31 139.4 91 76.9
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 1.8e-31 139.4 91 78.0
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 2.3e-31 139.0 90 78.9
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 2.3e-31 139.0 91 75.8
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 3.0e-31 138.7 91 78.0
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 3.0e-31 138.7 91 78.0
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 3.0e-31 138.7 88 80.7
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.9e-31 138.3 91 76.9
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.9e-31 138.3 91 76.9
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 5.1e-31 137.9 91 79.1
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 5.1e-31 137.9 91 79.1
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 8.7e-31 137.1 91 75.8
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 8.7e-31 137.1 91 76.9
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 8.7e-31 137.1 91 75.8
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 1.1e-30 136.7 91 75.8
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.5e-30 136.3 91 78.0
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.5e-30 136.3 91 78.0
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.9e-30 136.0 91 78.0
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.9e-30 136.0 90 76.7
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 2.5e-30 135.6 90 74.4
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.3e-30 135.2 90 75.6
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 3.3e-30 135.2 91 75.8
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 4.3e-30 134.8 91 75.8
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 4.3e-30 134.8 91 74.7
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 5.7e-30 134.4 91 75.8
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 5.7e-30 134.4 91 73.6
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 5.7e-30 134.4 91 75.8
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 5.7e-30 134.4 91 74.7
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 5.7e-30 134.4 91 72.5
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 7.4e-30 134.0 91 73.6
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 9.6e-30 133.7 91 73.6
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 9.6e-30 133.7 91 74.7
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 9.6e-30 133.7 91 74.7
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 1.3e-29 133.3 81 82.7
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.3e-29 133.3 90 74.4
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 1.6e-29 132.9 91 75.8
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 1.6e-29 132.9 91 75.8
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 1.6e-29 132.9 91 74.7
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 2.1e-29 132.5 91 72.5
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 2.1e-29 132.5 91 72.5
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 2.1e-29 132.5 91 72.5
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 2.1e-29 132.5 91 74.7
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.1e-29 132.5 91 74.7
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 2.1e-29 132.5 91 75.8
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 2.8e-29 132.1 91 73.6
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 2.8e-29 132.1 91 74.7
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 4.8e-29 131.3 91 73.6
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 8.2e-29 130.6 91 73.6
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 1.1e-28 130.2 91 74.7
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 1.4e-28 129.8 91 71.4
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.8e-28 129.4 91 72.5
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.8e-28 129.4 91 73.6
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.8e-28 129.4 91 72.5
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 1.8e-28 129.4 91 72.5
SHI09338 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-28 129.0 90 74.4
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 4.1e-28 128.3 91 73.6
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 4.1e-28 128.3 91 70.3
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 4.1e-28 128.3 91 70.3
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 4.1e-28 128.3 91 70.3
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 4.1e-28 128.3 91 70.3
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 4.1e-28 128.3 91 70.3
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 5.3e-28 127.9 91 69.2
Actinidia04640 Actinidia chinensis HOM05D003128 ORTHO05D004333 1.2e-27 126.7 91 72.5
Sed0009581 Sechium edule HOM05D003128 ORTHO05D004333 1.2e-27 126.7 91 69.2
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 1.5e-27 126.3 91 69.2
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 1.5e-27 126.3 87 77.0
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 2.0e-27 125.9 91 71.4
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 3.4e-27 125.2 88 75.0
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 7.6e-27 124.0 91 68.1
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 7.6e-27 124.0 91 69.2
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.0e-26 123.6 100 66.0
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 8.4e-26 120.6 89 69.7
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 1.9e-25 119.4 91 69.2
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 3.5e-24 115.2 91 64.8
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 4.6e-24 114.8 91 63.7
ECA236G4711 Erigeron canadensis HOM05D003128 ORTHO05D004333 2.3e-23 112.5 88 67.0
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.5e-22 109.8 88 63.6
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 4.3e-22 108.2 91 61.5
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 3.7e-21 105.1 91 57.1
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 8.2e-21 104.0 82 68.3
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 8.2e-21 104.0 82 68.3
Haze_27374 Corylus avellana HOM05D003128 ORTHO05D004333 5.5e-17 91.3 90 52.2
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 2.2e-13 79.3 77 61.0
SHI39228 Sapria himalayana HOM05D003128 ORTHO05D000778 2.2e-13 79.3 45 73.3
SHI45136 Sapria himalayana HOM05D003128 ORTHO05D004333 2.2e-13 79.3 40 82.5
SHI48834 Sapria himalayana HOM05D008459 ORTHO05D003903 3.7e-13 78.6 45 75.6
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 5.3e-12 74.7 50 84.0
SHI29408 Sapria himalayana HOM05D003128 ORTHO05D004333 1.2e-08 63.5 39 69.2
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 2.6e-06 55.8 40 70.0


User provided reference genes

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