Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 2.9e-134 481.9 236 100.0
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 6.5e-94 347.8 229 76.9
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.1e-93 347.1 229 78.2
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 1.5e-71 273.5 167 76.0
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 3.8e-70 268.9 181 74.0
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 3.8e-70 268.9 181 74.0
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 1.6e-68 263.5 168 75.6
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 2.1e-68 263.1 154 81.2
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 2.1e-68 263.1 157 78.3
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 2.7e-68 262.7 171 74.3
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 6.1e-68 261.5 159 78.0
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 6.1e-68 261.5 194 66.5
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 7.9e-68 261.2 194 69.1
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 7.9e-68 261.2 194 66.5
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 1.0e-67 260.8 158 77.2
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.0e-67 260.8 168 74.4
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 1.4e-67 260.4 165 76.4
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.8e-67 260.0 152 81.6
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 1.8e-67 260.0 171 72.5
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 2.3e-67 259.6 158 77.8
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 3.0e-67 259.2 166 72.9
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 3.0e-67 259.2 156 77.6
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 3.9e-67 258.8 158 77.8
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 3.9e-67 258.8 167 75.4
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 6.7e-67 258.1 158 77.8
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 6.7e-67 258.1 153 79.7
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 8.8e-67 257.7 157 77.1
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 8.8e-67 257.7 153 79.7
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 8.8e-67 257.7 153 79.1
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 1.1e-66 257.3 157 76.4
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 1.5e-66 256.9 156 78.2
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 1.5e-66 256.9 157 76.4
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.5e-66 256.9 157 76.4
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.5e-66 256.9 157 76.4
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.5e-66 256.9 161 75.8
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 3.3e-66 255.8 158 76.6
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 3.3e-66 255.8 157 75.8
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 4.4e-66 255.4 196 66.3
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 4.4e-66 255.4 158 76.6
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 4.4e-66 255.4 157 77.7
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 5.7e-66 255.0 156 77.6
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 7.4e-66 254.6 157 78.3
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 9.7e-66 254.2 218 61.0
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 9.7e-66 254.2 161 77.0
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 9.7e-66 254.2 157 77.7
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 1.3e-65 253.8 158 76.6
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.7e-65 253.4 158 75.9
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 1.7e-65 253.4 157 74.5
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.7e-65 253.4 170 72.9
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 2.8e-65 252.7 155 78.7
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 2.8e-65 252.7 158 76.6
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 3.7e-65 252.3 158 74.1
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.8e-65 251.9 183 68.9
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 6.3e-65 251.5 169 71.6
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 8.2e-65 251.1 157 74.5
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 8.2e-65 251.1 157 75.2
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 1.1e-64 250.8 154 78.6
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.4e-64 250.4 158 74.7
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.8e-64 250.0 157 76.4
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 1.8e-64 250.0 173 71.7
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 2.4e-64 249.6 158 75.3
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 3.1e-64 249.2 158 74.1
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 3.1e-64 249.2 158 74.1
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 3.1e-64 249.2 158 74.1
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 3.1e-64 249.2 172 71.5
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 5.3e-64 248.4 158 74.1
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 5.3e-64 248.4 154 75.3
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 7.0e-64 248.1 158 74.1
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 7.0e-64 248.1 166 71.1
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 7.0e-64 248.1 183 65.6
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 7.0e-64 248.1 162 74.1
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 9.1e-64 247.7 158 73.4
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 9.1e-64 247.7 167 71.9
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.2e-63 247.3 156 75.6
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 1.2e-63 247.3 158 72.8
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 4.5e-63 245.4 154 76.0
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 4.5e-63 245.4 158 73.4
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 4.5e-63 245.4 156 73.1
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 7.7e-63 244.6 158 74.7
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.0e-62 244.2 154 75.3
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.0e-62 244.2 145 82.8
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 2.2e-62 243.0 194 63.9
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 2.2e-62 243.0 156 72.4
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.5e-62 241.5 153 75.2
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 6.5e-62 241.5 165 70.9
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 1.1e-61 240.7 156 72.4
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.5e-61 240.4 156 72.4
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 2.5e-61 239.6 190 63.7
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.5e-61 239.6 148 76.4
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 4.2e-61 238.8 176 68.2
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 9.4e-61 237.7 167 72.5
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 2.7e-60 236.1 149 74.5
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 6.1e-60 235.0 154 72.1
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 1.4e-59 233.8 183 63.4
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 3.0e-59 232.6 154 70.8
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 3.3e-58 229.2 154 72.7
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 7.5e-58 228.0 198 60.6
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 9.7e-58 227.6 191 61.8
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 2.8e-57 226.1 144 77.1
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 4.1e-56 222.2 207 56.0
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.6e-55 219.5 196 58.7
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 5.0e-54 215.3 147 70.7
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 2.7e-52 209.5 169 62.7
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 6.8e-51 204.9 156 66.0
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 7.5e-50 201.4 154 63.0
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 8.3e-49 198.0 130 75.4
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.1e-48 196.1 153 58.8
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.9e-46 189.5 120 75.8
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 8.5e-46 188.0 133 69.9
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.1e-45 187.6 152 57.2
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.7e-41 172.6 167 55.1
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 2.4e-40 169.9 143 61.5
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 2.0e-39 166.8 161 52.8
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 4.4e-34 149.1 85 80.0
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 5.9e-31 138.7 135 54.1
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 5.9e-31 138.7 135 54.1
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.1e-27 126.3 115 50.4
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.1e-24 117.9 84 71.4
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 7.8e-23 111.7 119 44.5
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 1.7e-22 110.5 74 73.0
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 3.9e-22 109.4 116 43.1
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 3.6e-20 102.8 116 44.8
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 6.2e-20 102.1 60 78.3
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 7.1e-16 88.6 137 40.1
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.7e-14 84.0 38 97.4
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 4.4e-10 69.3 46 73.9
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.4e-08 63.5 53 62.3
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 3.2e-08 63.2 100 35.0
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 2.7e-07 60.1 42 64.3
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 5.1e-06 55.8 129 30.2
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 5.1e-06 55.8 129 30.2


User provided reference genes

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