Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 9.5e-250 866.3 417 100.0
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 8.7e-211 736.9 408 84.8
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.1e-208 728.0 408 83.6
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 9.7e-202 706.8 411 79.6
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 3.6e-180 635.2 400 74.0
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.2e-156 557.0 399 64.4
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.6e-156 556.6 398 65.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 6.1e-156 554.7 409 63.1
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 3.0e-155 552.4 407 63.6
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 7.5e-154 547.7 407 61.9
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 9.8e-154 547.4 394 63.7
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.7e-153 546.6 397 63.0
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 4.9e-153 545.0 409 62.3
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 8.3e-153 544.3 394 63.7
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 2.4e-152 542.7 401 61.6
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.2e-152 542.3 403 61.0
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 4.1e-152 542.0 397 62.0
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 5.4e-152 541.6 403 61.3
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 5.4e-152 541.6 403 61.3
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 5.4e-152 541.6 402 61.2
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 7.0e-152 541.2 403 61.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.6e-151 540.0 403 61.0
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.5e-151 538.9 407 62.4
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 3.5e-151 538.9 404 60.9
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 4.6e-151 538.5 399 62.9
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 5.9e-151 538.1 403 60.8
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 7.8e-151 537.7 403 60.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.7e-150 536.6 402 60.9
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 3.0e-150 535.8 400 60.2
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 3.9e-150 535.4 403 60.0
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.9e-150 535.4 397 61.5
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 5.0e-150 535.0 399 61.9
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.0e-150 535.0 405 60.0
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 6.6e-150 534.6 403 60.8
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 6.6e-150 534.6 404 60.1
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 6.6e-150 534.6 402 60.2
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 6.6e-150 534.6 402 60.2
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 8.6e-150 534.3 404 59.4
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.1e-149 533.9 398 61.6
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.1e-149 533.9 394 61.7
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.9e-149 533.1 400 61.8
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.9e-149 533.1 398 60.6
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.3e-149 532.3 400 61.2
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.3e-149 532.3 403 60.0
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.3e-149 532.3 405 60.2
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.3e-149 532.3 404 60.4
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.3e-149 531.9 394 61.7
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.3e-149 531.9 398 61.1
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 7.3e-149 531.2 400 60.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.3e-149 531.2 400 61.5
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 9.5e-149 530.8 405 60.0
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.2e-148 530.4 391 61.9
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.6e-148 530.0 401 60.3
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.6e-148 530.0 397 61.5
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.6e-148 528.9 400 60.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 4.7e-148 528.5 398 60.6
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 6.2e-148 528.1 405 60.0
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 6.2e-148 528.1 399 61.7
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.0e-147 527.3 398 61.8
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.4e-147 526.9 401 60.6
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 3.1e-147 525.8 398 60.3
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 6.8e-147 524.6 401 59.9
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 8.9e-147 524.2 399 60.4
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 8.9e-147 524.2 398 61.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.5e-146 523.5 398 60.3
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 2.0e-146 523.1 401 59.1
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 2.0e-146 523.1 399 60.2
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.6e-146 522.7 399 60.7
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 5.8e-146 521.5 400 59.8
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 9.8e-146 520.8 402 61.2
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.3e-145 520.4 407 58.2
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.7e-145 520.0 407 58.5
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 4.9e-145 518.5 404 59.4
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 4.9e-145 518.5 409 57.7
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.3e-145 517.7 395 61.3
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 4.1e-144 515.4 395 61.8
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.1e-144 515.4 387 61.5
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 9.2e-144 514.2 387 60.5
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.2e-143 513.8 387 61.2
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 3.5e-143 512.3 393 59.8
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 7.8e-143 511.1 396 60.9
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.3e-142 510.4 403 58.8
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 6.6e-142 508.1 393 59.0
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.3e-141 505.4 395 59.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 9.5e-141 504.2 403 59.1
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.6e-140 503.4 395 58.0
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 6.2e-140 501.5 399 59.4
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 8.1e-140 501.1 396 59.1
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-139 500.7 394 58.6
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 2.3e-139 499.6 406 58.1
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 6.8e-139 498.0 388 58.8
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 9.8e-138 494.2 412 57.5
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.3e-137 493.8 401 57.6
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-137 493.8 394 57.4
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 2.2e-137 493.0 411 56.4
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.2e-136 489.2 391 59.1
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 3.2e-136 489.2 418 56.0
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.4e-136 488.4 385 58.2
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 3.9e-134 482.3 414 55.3
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.9e-133 479.9 403 57.1
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 7.3e-133 478.0 390 55.6
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.6e-132 475.7 393 54.7
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.1e-131 474.2 390 54.9
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.4e-131 473.8 390 55.4
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 6.8e-131 471.5 386 54.7
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.0e-130 469.9 391 54.5
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 9.9e-130 467.6 386 54.1
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-129 467.2 386 55.2
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-129 467.2 386 55.2
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.4e-128 463.0 382 55.2
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.6e-127 460.3 384 54.7
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.0e-127 458.4 377 55.2
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.0e-127 458.4 377 55.2
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.9e-125 453.4 383 52.2
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 9.6e-125 451.1 406 53.4
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.1e-124 449.9 404 55.2
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.1e-123 447.6 384 55.5
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 6.9e-123 444.9 397 54.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.9e-117 426.8 408 51.7
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.6e-117 425.2 401 51.4
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 5.6e-117 425.2 387 49.6
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.4e-115 419.9 405 52.1
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.7e-113 413.7 400 50.2
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 7.4e-109 398.3 386 48.4
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 6.2e-108 395.2 399 47.6
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.2e-106 391.0 377 51.2
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 6.4e-105 385.2 405 47.2
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.4e-104 383.3 421 47.0
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.5e-104 382.1 400 47.8
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.2e-103 380.9 399 47.6
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.8e-99 367.1 421 44.9
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 4.6e-95 352.4 400 47.2
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.3e-94 350.9 403 46.2
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.9e-82 308.9 404 41.8
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 5.0e-81 305.8 394 42.6
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.7e-76 290.8 401 40.9
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 8.2e-76 288.5 397 40.8
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.4e-75 287.0 397 40.8
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.6e-74 283.5 254 50.4
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.2e-72 276.2 404 37.6
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 6.7e-70 268.9 404 39.9
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 6.7e-62 242.3 184 57.1
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.8e-60 236.1 229 49.3
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 4.8e-60 236.1 440 34.1
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 9.8e-53 211.8 158 57.0
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 5.6e-40 169.5 155 52.9
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 7.8e-34 149.1 114 56.1
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.3e-33 148.3 392 28.3
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.0e-29 134.4 106 60.4
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.2e-27 127.1 319 28.2
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 3.0e-25 120.6 91 60.4
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.9e-21 105.5 421 26.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.2e-10 72.0 45 68.9
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.4e-06 57.8 222 23.9
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 9.0e-06 55.8 58 44.8


User provided reference genes

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