Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 3.4e-156 556.2 287 100.0
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 2.4e-117 427.2 305 75.1
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 3.4e-111 406.8 303 72.6
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 3.3e-98 363.6 282 70.9
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 1.2e-89 335.1 301 60.8
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 1.2e-89 335.1 312 62.2
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 5.2e-88 329.7 300 60.7
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 8.9e-88 328.9 245 68.6
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 3.4e-87 327.0 303 62.0
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 7.6e-87 325.9 305 60.7
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 4.9e-86 323.2 242 70.2
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 8.4e-86 322.4 297 59.6
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 4.2e-85 320.1 290 61.7
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 5.4e-85 319.7 251 65.3
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 9.2e-85 318.9 242 69.0
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 9.2e-85 318.9 249 67.9
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 1.6e-84 318.2 240 67.1
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 2.1e-84 317.8 300 59.3
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 2.1e-84 317.8 247 65.6
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 2.7e-84 317.4 249 67.1
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.0e-83 315.5 305 58.0
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 1.7e-83 314.7 317 58.0
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.3e-83 314.3 237 68.4
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 2.3e-83 314.3 291 60.5
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.3e-83 314.3 305 57.7
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 3.0e-83 313.9 251 65.3
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 3.0e-83 313.9 238 67.2
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 6.6e-83 312.8 238 68.5
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 6.6e-83 312.8 240 67.1
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 8.7e-83 312.4 270 60.7
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 8.7e-83 312.4 237 68.4
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 8.7e-83 312.4 236 67.8
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.1e-82 312.0 240 66.2
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.1e-82 312.0 240 66.2
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.5e-82 311.6 250 66.0
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 1.5e-82 311.6 238 67.6
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 1.9e-82 311.2 235 69.8
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 2.5e-82 310.8 242 65.3
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 3.3e-82 310.5 299 56.2
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 3.3e-82 310.5 309 56.0
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 4.3e-82 310.1 238 68.1
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 4.3e-82 310.1 240 65.4
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 5.6e-82 309.7 315 55.6
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 9.6e-82 308.9 315 56.2
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 9.6e-82 308.9 242 65.3
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.2e-81 308.5 291 60.5
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 1.2e-81 308.5 292 57.9
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.2e-81 308.5 318 54.7
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 1.6e-81 308.1 309 58.9
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.6e-81 308.1 245 63.7
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.6e-81 308.1 284 59.2
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 2.1e-81 307.8 298 58.7
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 2.1e-81 307.8 307 56.7
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 2.1e-81 307.8 246 65.0
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 2.8e-81 307.4 258 62.4
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 2.8e-81 307.4 276 60.5
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 4.7e-81 306.6 245 62.9
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 8.1e-81 305.8 234 65.8
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.1e-80 305.4 248 63.7
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 1.1e-80 305.4 245 63.7
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 1.8e-80 304.7 247 63.2
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 1.8e-80 304.7 292 58.2
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 2.4e-80 304.3 248 64.1
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 3.1e-80 303.9 307 55.4
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 3.1e-80 303.9 232 65.9
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 3.1e-80 303.9 245 63.7
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 3.1e-80 303.9 305 55.4
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 4.0e-80 303.5 235 66.4
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 5.3e-80 303.1 250 66.0
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.2e-79 302.0 292 57.9
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 1.2e-79 302.0 246 65.4
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 1.5e-79 301.6 238 65.1
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.5e-79 301.6 246 66.7
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.0e-79 301.2 311 57.2
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 2.6e-79 300.8 293 58.0
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 3.4e-79 300.4 294 57.8
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 5.8e-79 299.7 247 63.2
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 9.9e-79 298.9 284 58.1
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.7e-78 298.1 311 56.6
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 2.2e-78 297.7 278 58.3
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 2.2e-78 297.7 278 58.3
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 2.2e-78 297.7 278 58.3
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 3.8e-78 297.0 294 55.4
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 6.4e-78 296.2 237 62.9
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 1.1e-77 295.4 240 64.6
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.9e-77 294.7 291 56.4
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 2.4e-77 294.3 237 63.7
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 3.2e-77 293.9 314 52.9
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 5.4e-77 293.1 307 54.4
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 5.4e-77 293.1 307 54.4
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 9.3e-77 292.4 257 59.1
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 2.3e-75 287.7 212 68.9
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 5.1e-75 286.6 293 56.7
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 2.5e-74 284.3 226 62.4
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 8.1e-73 279.3 238 61.3
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 2.0e-71 274.6 259 57.9
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.3e-67 261.9 286 52.8
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.8e-67 261.5 317 50.2
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 2.4e-64 251.1 161 76.4
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 4.3e-50 203.8 167 64.7
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 1.5e-47 195.3 226 51.8
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 2.6e-47 194.5 156 62.8
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 3.9e-43 180.6 241 42.3
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 1.4e-32 145.6 187 43.9
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 3.1e-32 144.4 205 40.5
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 6.7e-27 126.7 243 35.4
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 6.3e-25 120.2 213 33.3
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 1.3e-22 112.5 241 32.8
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.5e-21 109.0 175 37.1
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 2.7e-20 104.8 178 34.3
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 2.1e-12 78.6 64 56.2
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.4e-11 75.9 46 76.1
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.4e-11 75.9 46 76.1
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.4e-11 75.9 46 73.9
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 4.0e-11 74.3 45 77.8
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 6.8e-11 73.6 46 73.9
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.3e-09 69.3 54 64.8
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 1.3e-09 69.3 295 25.1
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 1.7e-09 68.9 46 67.4
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 3.8e-06 57.8 36 75.0
TPR.G15519 Trifolium pratense HOM05D000001 ORTHO05D000003 8.6e-06 56.6 165 26.7


User provided reference genes

Program Settings