Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.3e-92 343.2 189 100.0
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 4.0e-62 241.9 264 56.4
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 4.4e-61 238.4 271 55.4
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 4.4e-61 238.4 274 54.4
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 9.8e-61 237.3 271 54.6
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.1e-59 233.8 273 53.8
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 3.2e-59 232.3 273 52.4
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.4e-59 231.5 273 53.1
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 2.7e-58 229.2 278 52.5
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 4.6e-58 228.4 271 52.8
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.0e-58 228.0 274 53.6
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 6.0e-58 228.0 272 51.8
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.8e-58 227.6 274 53.3
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.3e-57 226.9 275 52.0
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-57 226.9 274 53.3
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-57 226.9 273 53.5
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.3e-57 226.9 273 53.1
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.3e-57 226.9 274 52.9
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.7e-57 226.5 271 51.7
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.7e-57 226.5 270 52.2
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 3.0e-57 225.7 267 52.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 3.9e-57 225.3 273 52.7
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 3.9e-57 225.3 273 53.1
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.9e-56 223.0 278 52.9
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 2.5e-56 222.6 272 51.5
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 7.3e-56 221.1 275 52.0
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 8.1e-55 217.6 272 51.1
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 8.1e-55 217.6 271 52.0
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.4e-54 216.9 277 52.0
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.4e-54 216.9 277 52.0
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.4e-54 216.9 275 52.0
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.8e-54 216.5 277 52.0
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 3.1e-54 215.7 276 51.8
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 5.2e-54 214.9 274 50.7
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 5.2e-54 214.9 278 51.4
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 5.2e-54 214.9 273 51.3
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 5.2e-54 214.9 272 51.8
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 6.8e-54 214.5 281 49.1
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 8.9e-54 214.2 274 52.2
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 8.9e-54 214.2 272 52.2
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 8.9e-54 214.2 276 53.3
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 1.2e-53 213.8 271 51.7
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.0e-53 213.0 272 52.2
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 2.6e-53 212.6 254 52.0
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 9.9e-53 210.7 273 50.2
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.3e-52 210.3 276 50.7
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.7e-52 209.9 274 50.7
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 6.4e-52 208.0 266 48.9
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 6.4e-52 208.0 274 51.5
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.1e-51 207.2 275 52.0
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.1e-51 207.2 275 52.0
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 1.1e-51 207.2 272 51.5
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.4e-51 206.8 274 50.0
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 5.4e-51 204.9 274 51.5
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 5.4e-51 204.9 274 48.5
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 7.1e-51 204.5 277 53.1
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 7.1e-51 204.5 274 50.0
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 9.2e-51 204.1 272 50.4
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 9.2e-51 204.1 273 49.1
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.6e-50 203.4 277 50.9
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 4.6e-50 201.8 271 50.9
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 6.0e-50 201.4 275 49.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 7.8e-50 201.1 161 70.2
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 7.8e-50 201.1 230 54.3
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 7.8e-50 201.1 273 48.4
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.0e-49 200.7 272 51.5
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.7e-49 199.9 272 51.5
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.3e-49 199.5 266 50.0
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 8.6e-49 197.6 274 48.2
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.1e-48 197.2 161 68.9
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.5e-48 196.8 271 50.2
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.5e-48 196.8 271 50.2
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.9e-48 196.4 272 47.8
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 2.5e-48 196.1 147 71.4
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 4.3e-48 195.3 272 50.0
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 7.3e-48 194.5 245 50.6
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 9.5e-48 194.1 274 49.3
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 9.5e-48 194.1 277 48.4
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 9.5e-48 194.1 282 47.5
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 6.2e-47 191.4 274 49.3
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 6.2e-47 191.4 282 46.8
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 6.2e-47 191.4 282 46.8
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 6.2e-47 191.4 273 48.4
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 8.1e-47 191.0 282 46.8
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.1e-46 190.7 275 49.8
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.1e-46 190.7 275 48.7
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.1e-46 190.7 273 49.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.4e-46 190.3 271 51.3
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.8e-46 189.9 271 48.3
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.4e-46 189.5 274 48.5
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 2.4e-46 189.5 275 46.5
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 3.1e-46 189.1 273 49.1
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 3.1e-46 189.1 273 48.7
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 3.1e-46 189.1 163 65.0
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 5.2e-46 188.3 276 47.1
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 5.2e-46 188.3 160 65.0
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 6.8e-46 188.0 273 48.7
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 6.8e-46 188.0 274 48.9
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 6.8e-46 188.0 273 48.7
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 6.8e-46 188.0 274 48.9
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 6.8e-46 188.0 274 48.9
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 6.8e-46 188.0 273 48.7
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 6.8e-46 188.0 273 48.7
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 6.8e-46 188.0 274 48.9
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 8.9e-46 187.6 234 52.6
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 8.9e-46 187.6 273 49.1
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 8.9e-46 187.6 163 63.2
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.2e-45 187.2 233 52.4
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.5e-45 186.8 273 48.7
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.5e-45 186.8 275 48.4
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.0e-45 186.4 164 64.0
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.6e-45 186.0 271 48.0
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.6e-45 186.0 275 46.9
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 2.6e-45 186.0 160 63.8
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 3.4e-45 185.7 273 48.4
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 3.4e-45 185.7 282 46.5
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 4.4e-45 185.3 161 64.6
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 5.8e-45 184.9 160 63.1
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 9.9e-45 184.1 259 49.0
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 9.9e-45 184.1 268 48.1
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.6e-42 176.8 157 61.1
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 3.3e-40 169.1 156 57.7
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 2.1e-39 166.4 161 55.9
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 6.2e-39 164.9 282 42.6
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.7e-36 156.8 161 53.4
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 8.4e-36 154.5 154 51.9
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-33 147.1 135 63.7
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.4e-30 136.3 192 48.4
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.2e-29 134.0 163 50.9
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 5.1e-25 118.6 166 51.2
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 7.6e-21 104.8 188 44.7
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.9e-18 94.7 176 38.1
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.9e-18 94.7 176 38.1
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.8e-17 93.6 55 83.6
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 4.3e-16 89.0 72 73.6
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.6e-16 87.8 81 64.2
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.2e-13 80.9 155 45.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.4e-13 79.3 171 43.3
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.3e-12 77.4 81 55.6
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 9.0e-06 54.7 111 35.1


User provided reference genes

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