Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 3.7e-176 622.5 639 100.0
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 7.8e-94 349.0 204 91.2
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 6.6e-93 345.9 204 89.7
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.1e-87 328.6 202 84.7
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.4e-87 328.2 202 85.1
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 2.4e-87 327.4 202 84.7
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 3.2e-87 327.0 202 84.2
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 7.1e-87 325.9 202 84.2
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 9.3e-87 325.5 202 83.7
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 1.6e-86 324.7 202 82.7
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 2.1e-86 324.3 202 83.7
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 2.1e-86 324.3 202 84.7
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 2.7e-86 323.9 202 83.7
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.7e-86 323.9 202 83.7
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.5e-86 323.6 202 84.2
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.0e-85 322.0 202 83.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.3e-85 321.6 202 83.2
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.3e-85 321.6 202 84.2
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 3.0e-85 320.5 202 82.7
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 3.9e-85 320.1 202 82.2
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 5.1e-85 319.7 202 83.7
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 5.1e-85 319.7 202 82.7
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 5.1e-85 319.7 202 83.2
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 6.7e-85 319.3 202 82.7
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.7e-85 318.9 200 84.0
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.7e-85 318.9 200 84.0
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 8.7e-85 318.9 203 82.8
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 8.7e-85 318.9 202 82.2
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.1e-84 318.5 202 83.7
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.1e-84 318.5 202 84.2
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.5e-84 318.2 202 81.7
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 1.9e-84 317.8 202 81.7
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 2.5e-84 317.4 202 82.7
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 3.3e-84 317.0 203 82.8
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 3.3e-84 317.0 202 82.7
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 3.3e-84 317.0 202 82.2
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 4.3e-84 316.6 202 82.2
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 4.3e-84 316.6 202 81.7
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 4.3e-84 316.6 202 82.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 5.6e-84 316.2 206 81.1
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 5.6e-84 316.2 202 82.7
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 5.6e-84 316.2 202 82.2
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 7.4e-84 315.8 202 82.7
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.3e-83 315.1 197 83.8
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.1e-83 314.3 197 84.3
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 2.8e-83 313.9 203 82.3
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 2.8e-83 313.9 203 82.3
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 2.8e-83 313.9 211 80.6
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 2.8e-83 313.9 202 81.2
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 3.7e-83 313.5 202 80.7
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 6.2e-83 312.8 202 82.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 8.1e-83 312.4 202 80.7
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 8.1e-83 312.4 202 81.7
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.1e-82 312.0 203 80.8
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.1e-82 312.0 202 81.2
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.8e-82 311.2 202 79.7
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.8e-82 311.2 203 80.8
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.4e-82 310.8 202 79.7
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 3.1e-82 310.5 202 81.7
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.0e-82 310.1 202 80.2
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 4.0e-82 310.1 202 79.7
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 5.3e-82 309.7 202 80.2
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.3e-82 309.7 202 79.7
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.9e-82 309.3 202 79.7
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.9e-82 309.3 202 79.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 6.9e-82 309.3 202 79.2
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.2e-81 308.5 202 79.7
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.0e-81 307.8 203 80.3
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.6e-81 307.4 202 80.2
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 3.4e-81 307.0 202 78.7
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.8e-81 306.2 202 80.7
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 5.8e-81 306.2 202 79.7
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 7.6e-81 305.8 202 79.2
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 7.6e-81 305.8 196 82.1
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 9.9e-81 305.4 202 78.7
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.3e-80 305.1 210 78.1
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.2e-80 304.3 203 80.8
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 3.8e-80 303.5 202 78.2
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 8.4e-80 302.4 206 79.1
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.4e-79 301.6 193 81.3
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.9e-79 301.2 202 78.2
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.4e-79 300.8 204 80.4
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 3.5e-78 297.0 202 78.7
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.0e-77 295.4 202 78.2
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 5.6e-76 289.7 193 78.8
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 3.1e-74 283.9 202 73.8
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 6.9e-74 282.7 203 72.9
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.5e-73 281.6 202 73.8
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.4e-73 280.4 194 79.9
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 4.5e-73 280.0 241 66.4
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.9e-71 274.6 202 70.3
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.5e-71 274.2 202 70.3
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 3.2e-71 273.9 174 83.3
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 9.3e-71 272.3 188 80.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-70 271.9 174 81.6
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.7e-70 270.8 176 81.2
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 5.1e-69 266.5 174 80.5
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.5e-68 265.0 174 77.6
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 4.1e-66 256.9 222 65.3
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 4.1e-66 256.9 194 67.5
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 7.6e-65 252.7 194 66.0
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 8.5e-64 249.2 202 64.4
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.1e-62 244.6 185 68.6
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 3.1e-58 230.7 172 75.0
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 1.3e-56 225.3 150 81.3
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 4.2e-55 220.3 169 72.2
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.2e-48 198.0 186 58.1
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.5e-39 167.9 153 58.2
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 2.2e-32 144.8 91 79.1
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.1e-31 142.5 112 61.6
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 6.3e-27 126.7 103 69.9
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 5.0e-24 117.1 77 76.6
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.9e-23 115.2 192 39.6
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 3.3e-23 114.4 201 35.8
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 8.0e-22 109.8 77 76.6
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.0e-21 107.8 75 74.7
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.5e-20 105.5 64 82.8
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 2.2e-19 101.7 63 79.4
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 7.8e-17 93.2 56 80.4
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.3e-16 92.4 60 73.3
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 5.6e-15 87.0 169 34.9
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 1.6e-14 85.5 63 68.3
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.8e-14 84.7 107 45.8
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 5.2e-13 80.5 168 33.3
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.0e-12 78.6 51 70.6
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.6e-12 78.2 139 34.5
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.6e-12 78.2 139 34.5
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 3.7e-11 74.3 59 64.4
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 6.4e-11 73.6 52 67.3
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 8.3e-11 73.2 159 34.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 4.3e-07 60.8 39 74.4
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 9.5e-07 59.7 141 25.5


User provided reference genes

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