Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 2.0e-71 272.3 136 100.0
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 7.1e-69 263.8 136 95.6
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.7e-67 259.2 136 94.1
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 8.9e-64 246.9 136 87.5
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.2e-61 238.4 136 85.3
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 9.2e-61 236.9 136 84.6
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 84.6
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 85.3
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 3.5e-60 235.0 136 84.6
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 4.6e-60 234.6 136 84.6
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 6.0e-60 234.2 136 83.8
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 6.0e-60 234.2 135 83.7
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 6.0e-60 234.2 136 83.8
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 1.0e-59 233.4 136 86.0
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.0e-59 233.4 136 83.8
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 83.8
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 82.4
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 83.1
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.1
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.1
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 8.7e-59 230.3 136 82.4
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 8.7e-59 230.3 136 82.4
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 8.7e-59 230.3 136 81.6
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.8
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.1
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.1
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.5e-58 229.6 136 83.8
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.9e-58 229.2 200 63.0
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 2.5e-58 228.8 136 83.1
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 2.5e-58 228.8 136 81.6
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.5e-58 228.8 131 84.0
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.5e-58 228.8 131 84.0
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 2.5e-58 228.8 131 83.2
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 2.5e-58 228.8 136 83.1
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 3.3e-58 228.4 136 81.6
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 4.3e-58 228.0 134 82.1
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 4.3e-58 228.0 136 81.6
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 4.3e-58 228.0 136 82.4
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 4.3e-58 228.0 136 82.4
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 5.6e-58 227.6 136 83.1
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 5.6e-58 227.6 132 83.3
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.6e-58 227.6 132 83.3
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.6e-58 227.6 132 83.3
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 5.6e-58 227.6 132 83.3
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 7.3e-58 227.3 136 82.4
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 7.3e-58 227.3 132 83.3
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.6e-58 226.9 136 80.9
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.2e-57 226.5 136 81.6
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.2e-57 226.5 132 83.3
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.2e-57 226.5 131 84.0
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 2.1e-57 225.7 131 82.4
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 2.1e-57 225.7 136 80.9
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 2.1e-57 225.7 131 83.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.8e-57 225.3 130 83.1
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-57 225.3 134 80.6
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 3.6e-57 224.9 131 84.0
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 3.6e-57 224.9 136 82.4
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 4.7e-57 224.6 131 83.2
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 4.7e-57 224.6 136 80.1
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 4.7e-57 224.6 136 80.9
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 6.2e-57 224.2 136 80.9
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.2e-57 224.2 136 80.1
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.2e-57 224.2 132 82.6
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 8.1e-57 223.8 136 80.1
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 8.1e-57 223.8 131 83.2
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 8.1e-57 223.8 132 82.6
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.1e-56 223.4 131 81.7
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.1e-56 223.4 131 82.4
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.1e-56 223.4 131 82.4
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.4e-56 223.0 131 82.4
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-56 223.0 132 81.1
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.8e-56 222.6 131 81.7
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.8e-56 222.6 132 81.8
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 2.4e-56 222.2 129 83.7
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 80.1
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 80.1
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 80.1
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 2.4e-56 222.2 131 81.7
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 2.4e-56 222.2 131 81.7
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 3.1e-56 221.9 131 81.7
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 3.1e-56 221.9 136 81.6
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 4.0e-56 221.5 136 80.1
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 5.2e-56 221.1 131 81.7
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 6.9e-56 220.7 136 80.1
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 2.6e-55 218.8 131 81.7
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 7.6e-55 217.2 127 82.7
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 9.9e-55 216.9 138 78.3
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.2e-54 215.7 138 77.5
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 3.8e-54 214.9 136 76.5
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.1e-53 213.4 136 77.2
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.4e-53 213.0 136 77.2
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.9e-53 212.6 137 78.8
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 2.4e-53 212.2 136 75.7
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.2e-53 211.5 168 66.7
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.2e-53 211.5 155 69.7
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.2e-52 209.9 168 66.1
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.6e-52 209.5 131 79.4
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 3.5e-52 208.4 128 79.7
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 3.9e-51 204.9 125 81.6
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 5.6e-50 201.1 133 74.4
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.6e-49 198.4 136 71.3
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 8.1e-49 197.2 184 58.2
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.0e-48 193.7 136 69.9
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-46 189.9 136 74.3
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.7e-46 189.5 136 67.6
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.2e-46 189.1 102 89.2
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.8e-46 188.3 131 69.5
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 1.9e-45 186.0 137 72.3
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.7e-44 182.2 131 62.6
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 7.9e-44 180.6 132 62.1
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.3e-43 179.1 132 70.5
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 7.4e-42 174.1 123 68.3
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.6e-41 172.9 131 64.1
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 2.0e-39 166.0 127 67.7
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 7.6e-39 164.1 132 59.8
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.2e-38 162.5 144 62.5
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.8e-35 152.9 116 65.5
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 8.7e-35 150.6 91 81.3
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-33 145.6 89 80.9
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.7e-33 145.2 85 85.9
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 6.2e-33 144.4 89 79.8
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 6.2e-33 144.4 89 79.8
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 8.2e-33 144.1 86 80.2
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.4e-32 143.3 79 83.5
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 5.3e-32 141.4 86 81.4
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.5e-31 139.8 97 70.1
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.5e-31 139.8 90 71.1
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.5e-31 139.8 85 81.2
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 3.4e-31 138.7 136 58.1
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.8e-30 135.2 90 70.0
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.1e-29 133.7 86 75.6
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-28 130.2 92 69.6
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.0e-27 127.1 105 67.6
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.3e-27 125.9 75 77.3
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-26 123.6 90 68.9
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.5e-26 123.2 71 77.5
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.7e-26 120.6 93 68.8
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.7e-25 118.6 68 77.9
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.1e-20 102.8 65 73.8
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.7e-19 97.8 91 57.1
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.1e-18 97.1 91 54.9
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.6e-15 85.9 76 55.3
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 5.9e-15 84.7 46 78.3
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.2e-14 82.8 45 77.8
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 4.7e-12 75.1 56 75.0
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.1e-08 63.9 42 73.8
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 1.8e-08 63.2 41 70.7
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.7e-06 56.6 47 63.8


User provided reference genes

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