Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 3.8e-196 688.0 339 100.0
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.5e-157 558.5 339 81.1
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 5.9e-149 531.2 355 75.5
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.3e-132 476.9 339 72.3
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 5.6e-131 471.5 339 69.0
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.0e-124 450.7 330 66.4
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 3.0e-124 449.1 341 65.1
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.9e-124 448.7 331 66.2
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 8.6e-124 447.6 331 66.2
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 3.3e-123 445.7 333 66.1
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 5.6e-123 444.9 331 64.4
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.1e-122 443.0 333 65.5
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 2.8e-122 442.6 332 64.5
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 3.6e-122 442.2 330 66.4
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 4.7e-122 441.8 333 65.2
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 4.7e-122 441.8 330 65.5
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 1.1e-121 440.7 333 66.7
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.4e-121 440.3 339 65.2
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 3.1e-121 439.1 336 64.9
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 5.2e-121 438.3 332 65.4
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 5.2e-121 438.3 329 64.1
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.6e-120 436.0 333 64.6
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 3.4e-120 435.6 329 65.0
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 2.2e-119 433.0 333 66.1
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 2.2e-119 433.0 330 64.2
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 2.9e-119 432.6 333 64.0
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 3.7e-119 432.2 331 64.4
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 3.7e-119 432.2 333 64.6
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 3.7e-119 432.2 333 65.2
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 3.7e-119 432.2 333 64.3
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 4.9e-119 431.8 329 63.5
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 4.9e-119 431.8 333 64.3
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 6.4e-119 431.4 329 64.4
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.9e-118 429.9 330 64.8
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.4e-118 429.5 330 64.5
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 3.2e-118 429.1 329 63.5
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 3.2e-118 429.1 329 63.5
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 4.1e-118 428.7 334 64.1
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 4.1e-118 428.7 330 65.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 4.1e-118 428.7 327 64.2
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 7.0e-118 427.9 330 64.8
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 7.0e-118 427.9 329 63.8
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 3.5e-117 425.6 337 63.2
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 4.6e-117 425.2 331 63.4
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.3e-116 423.7 330 65.8
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 2.3e-116 422.9 337 62.6
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 5.0e-116 421.8 330 63.9
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.1e-115 420.6 329 62.6
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 3.3e-115 419.1 329 63.8
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 5.6e-115 418.3 329 62.6
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 8.1e-114 414.5 333 64.3
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.1e-113 414.1 331 61.6
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 2.3e-113 412.9 329 63.8
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 4.0e-113 412.1 353 59.5
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 3.4e-112 409.1 332 62.7
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 3.4e-112 409.1 332 62.7
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 3.4e-112 409.1 331 60.7
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 7.5e-112 407.9 345 61.7
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.7e-111 406.8 374 57.0
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 8.3e-111 404.4 335 61.5
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.1e-110 404.1 333 61.0
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.4e-110 403.7 330 59.1
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.9e-110 403.3 332 60.2
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.6e-109 400.2 329 63.2
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 4.6e-109 398.7 329 62.6
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 5.1e-108 395.2 332 60.2
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 7.3e-107 391.3 322 62.7
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 4.4e-104 382.1 335 59.4
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 7.6e-104 381.3 337 58.2
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 5.4e-102 375.2 335 57.3
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 7.1e-102 374.8 331 55.9
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 3.5e-101 372.5 330 57.9
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 7.8e-101 371.3 330 57.9
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 7.8e-101 371.3 334 55.7
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.7e-100 370.2 329 56.5
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 3.0e-100 369.4 331 55.6
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 3.0e-100 369.4 290 62.8
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 5.1e-100 368.6 331 55.3
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 4.3e-99 365.5 331 55.3
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 7.3e-99 364.8 329 57.1
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 7.3e-99 364.8 331 55.3
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 7.3e-99 364.8 331 55.3
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 9.6e-99 364.4 329 55.9
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.8e-97 360.1 329 55.0
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 3.1e-97 359.4 331 54.1
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.2e-96 357.5 331 54.7
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 2.2e-95 353.2 329 54.1
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.2e-95 353.2 341 55.1
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 7.1e-94 348.2 329 52.0
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 7.8e-93 344.7 310 58.4
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 7.8e-93 344.7 336 52.1
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 3.0e-92 342.8 330 53.0
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 6.6e-92 341.7 348 52.3
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 1.3e-87 327.4 241 67.2
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.0e-84 317.8 301 57.5
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 3.8e-79 299.3 337 50.1
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 6.7e-76 288.5 353 44.8
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 2.8e-74 283.1 278 52.5
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 3.8e-71 272.7 246 58.5
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.9e-70 270.4 335 44.2
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 3.7e-66 256.1 465 35.9
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 7.2e-62 241.9 165 71.5
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.2e-61 241.1 315 42.5
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 6.9e-57 225.3 340 38.5
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 1.9e-54 217.2 335 39.4
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 3.0e-52 209.9 157 68.2
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.4e-46 191.0 190 52.1
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.7e-45 186.8 150 60.7
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 8.2e-42 175.3 184 53.3
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.1e-37 160.6 102 68.6
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.7e-37 159.5 147 54.4
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.0e-36 156.8 171 48.5
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.5e-30 137.9 128 53.9
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 7.2e-30 135.6 152 45.4
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.6e-24 117.9 81 64.2
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 6.1e-21 105.9 74 64.9
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 4.9e-18 96.3 60 68.3
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 8.3e-18 95.5 132 42.4
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 1.8e-12 77.8 134 35.8
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 4.0e-12 76.6 58 67.2
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 1.5e-11 74.7 60 55.0
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 3.5e-08 63.5 73 41.1
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 7.8e-08 62.4 57 57.9
Ca_29090_v3 Cicer arietinum L. HOM05D000582 ORTHO05D034183 8.6e-07 58.9 108 32.4


User provided reference genes

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