Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.8e-299 1031.2 530 100.0
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.8e-245 852.4 579 78.9
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 5.3e-229 797.7 583 73.4
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.1e-226 790.0 584 72.4
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 3.1e-221 771.9 596 70.8
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 3.6e-193 678.7 595 62.2
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 6.1e-193 677.9 601 62.2
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.4e-192 676.8 601 61.4
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 3.0e-192 675.6 603 61.5
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 9.8e-191 670.6 616 60.6
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.4e-189 666.8 601 61.2
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 1.0e-187 660.6 607 60.0
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.3e-187 660.2 606 60.1
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.7e-187 659.8 599 59.9
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 5.5e-186 654.8 596 59.4
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.2e-185 653.7 598 59.7
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.0e-185 651.0 593 59.5
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.0e-184 650.6 602 59.3
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.4e-184 650.2 588 60.0
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 2.3e-184 649.4 605 58.3
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.2e-184 648.3 625 58.2
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.8e-181 639.8 599 58.8
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 3.5e-180 635.6 598 59.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 4.5e-180 635.2 636 56.1
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.7e-179 633.3 601 58.1
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 5.0e-179 631.7 566 63.1
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 6.1e-177 624.8 604 57.9
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 5.2e-176 621.7 603 57.5
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.6e-175 619.4 602 56.5
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 7.5e-175 617.8 603 56.2
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 1.7e-174 616.7 607 56.0
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 2.9e-174 615.9 602 55.5
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 2.9e-174 615.9 605 56.5
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.1e-173 614.0 596 55.4
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 5.4e-173 611.7 594 56.2
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 9.2e-173 610.9 596 55.9
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.6e-172 610.1 596 57.7
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 2.0e-172 609.8 590 56.6
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.6e-172 608.6 589 57.2
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.3e-171 607.1 597 55.8
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.7e-171 606.7 601 55.6
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 2.3e-171 606.3 594 55.7
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 5.0e-171 605.1 591 56.5
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 6.6e-171 604.7 591 56.5
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 6.6e-171 604.7 605 56.0
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 8.6e-171 604.4 607 55.4
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 1.1e-170 604.0 599 54.6
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.5e-170 603.6 590 55.8
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.9e-170 603.2 589 57.0
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 9.5e-170 600.9 591 55.8
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.1e-169 599.7 589 55.3
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.1e-169 599.7 591 55.3
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 2.8e-169 599.4 591 55.3
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 3.6e-169 599.0 591 55.7
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 4.7e-169 598.6 565 56.8
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 4.7e-169 598.6 594 56.1
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 4.7e-169 598.6 599 54.9
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 6.2e-169 598.2 591 55.2
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 8.0e-169 597.8 594 55.9
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.4e-168 597.0 604 55.3
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.8e-168 596.7 591 55.2
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 5.2e-168 595.1 612 53.6
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.3e-166 590.5 598 54.7
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 3.7e-166 589.0 588 55.1
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 3.7e-166 589.0 585 55.2
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 3.7e-166 589.0 593 55.0
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 7.0e-165 584.7 601 53.9
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.3e-163 580.5 610 53.6
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.3e-163 580.5 596 54.4
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.7e-163 580.1 596 53.7
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 5.0e-163 578.6 589 53.1
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 7.3e-162 574.7 597 53.3
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 9.5e-162 574.3 593 53.5
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.2e-161 573.9 585 52.0
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.6e-161 573.5 585 52.5
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.1e-161 573.2 596 53.2
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 2.1e-161 573.2 583 56.4
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.4e-160 570.5 596 52.3
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 5.2e-160 568.5 582 53.8
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.5e-159 567.0 581 54.7
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.0e-159 566.6 540 58.5
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.3e-158 563.9 593 52.6
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 3.7e-158 562.4 553 55.3
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.7e-158 562.4 590 54.2
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 2.4e-157 559.7 600 52.2
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.6e-156 557.0 595 52.3
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 2.1e-156 556.6 597 52.8
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 4.6e-156 555.4 599 52.1
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.0e-155 552.7 524 55.3
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 5.1e-155 552.0 607 50.4
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 5.6e-154 548.5 602 51.2
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 8.1e-153 544.7 587 51.3
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.6e-151 539.7 601 50.1
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.3e-150 537.3 603 50.1
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.7e-150 537.0 603 50.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 4.9e-150 535.4 600 50.7
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.1e-149 534.3 605 50.7
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.9e-149 533.5 604 49.5
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 2.4e-149 533.1 606 49.3
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 9.2e-149 531.2 589 51.4
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-148 530.8 597 49.4
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 4.6e-148 528.9 597 49.2
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 6.0e-148 528.5 600 50.5
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 2.3e-147 526.6 520 57.9
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.0e-147 526.2 589 50.8
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 6.6e-147 525.0 602 49.8
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 8.6e-147 524.6 589 50.8
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.6e-147 524.6 589 50.8
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 8.6e-147 524.6 601 48.9
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.6e-146 521.2 588 50.5
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 9.6e-146 521.2 589 50.9
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.4e-144 517.3 589 50.3
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.5e-140 502.7 584 49.0
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 6.0e-140 501.9 574 49.7
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 2.5e-138 496.5 597 47.7
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 4.3e-138 495.7 598 49.8
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 7.3e-138 495.0 589 48.2
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 4.0e-128 462.6 597 45.1
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 3.2e-125 453.0 605 43.8
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 4.2e-125 452.6 357 66.4
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 5.1e-123 445.7 618 43.4
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 8.7e-123 444.9 596 45.3
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 2.1e-121 440.3 584 43.7
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.1e-120 436.4 399 60.4
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.0e-115 419.9 456 50.9
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 1.3e-113 414.5 591 42.0
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.4e-101 374.4 600 40.8
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.9e-100 368.6 317 61.5
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.2e-97 358.6 329 59.3
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 4.1e-88 329.7 316 56.3
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.1e-88 328.6 358 51.7
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.6e-84 317.8 509 40.5
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 2.1e-84 317.4 468 40.4
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 4.8e-81 306.2 632 34.3
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.4e-75 288.1 487 39.2
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.0e-67 261.9 247 55.9
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 1.2e-55 221.9 462 32.7
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 9.8e-50 202.2 546 30.8
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 4.6e-47 193.4 115 84.3
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.0e-46 192.2 182 57.7
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 4.3e-45 186.8 162 56.8
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 4.0e-43 180.3 162 57.4
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.2e-40 170.6 116 70.7
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.1e-39 167.9 237 44.7
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 3.5e-39 167.2 116 68.1
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.2e-34 152.1 175 50.9
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 4.4e-34 150.2 275 39.3
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.7e-33 148.3 162 53.1
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.1e-28 129.4 98 69.4
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.4e-27 128.6 98 69.4
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 9.9e-26 122.5 181 42.0
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.0e-22 110.9 82 67.1
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 6.6e-22 109.8 69 73.9
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 7.3e-21 106.3 145 49.7
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 1.6e-20 105.1 122 50.0
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 5.3e-19 100.1 119 47.1
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 3.4e-18 97.4 197 35.0
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 1.2e-15 89.0 65 61.5
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 7.9e-15 86.3 56 67.9
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-11 75.9 82 48.8
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 4.0e-11 73.9 134 39.6
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 2.9e-09 67.8 41 75.6
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.6e-07 62.0 35 82.9
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.6e-07 62.0 89 41.6


User provided reference genes

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