Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 3.3e-308 1060.8 526 100.0
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 2.2e-195 686.0 541 64.7
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.8e-184 649.8 533 64.2
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.7e-182 643.3 530 63.0
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.2e-137 491.9 535 49.9
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.8e-135 485.3 533 49.2
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 5.8e-135 485.3 530 50.2
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.3e-134 484.2 534 49.3
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.1e-130 471.1 528 49.2
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.5e-130 470.7 537 47.5
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 4.7e-129 465.7 525 48.8
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 8.1e-129 464.9 535 47.5
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 4.0e-128 462.6 540 47.4
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 4.0e-128 462.6 525 48.4
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 5.2e-128 462.2 536 46.3
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.4e-127 459.5 532 47.9
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 7.6e-127 458.4 532 47.9
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.7e-126 456.1 542 46.3
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 4.9e-126 455.7 534 47.9
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.4e-125 454.1 525 48.0
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.4e-125 454.1 528 46.4
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 3.5e-124 449.5 535 46.9
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 2.3e-123 446.8 533 46.7
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.6e-123 445.3 535 46.0
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.1e-122 444.5 527 47.1
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.5e-122 444.1 525 46.1
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.5e-122 443.4 531 45.4
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 4.3e-122 442.6 532 46.6
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.3e-122 442.6 544 46.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 4.3e-122 442.6 535 46.4
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 5.6e-122 442.2 542 46.3
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.3e-122 441.8 545 45.1
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 7.3e-122 441.8 533 47.1
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.2e-121 441.0 549 45.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-121 441.0 533 46.5
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-121 440.7 529 46.7
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 2.8e-121 439.9 528 46.0
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.8e-121 439.9 550 45.1
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 6.2e-121 438.7 528 45.8
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-120 438.0 529 46.3
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.8e-120 437.2 530 44.9
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 3.1e-120 436.4 533 46.2
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.8e-120 435.3 533 46.2
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 2.6e-119 433.3 540 45.4
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.4e-119 432.6 532 46.1
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 9.9e-119 431.4 555 44.0
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.7e-118 430.6 536 44.2
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.7e-118 430.6 541 46.4
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 3.8e-118 429.5 537 44.3
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 8.4e-118 428.3 542 44.1
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 5.4e-117 425.6 540 43.3
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 2.7e-116 423.3 542 43.9
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 7.8e-116 421.8 538 44.8
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.7e-115 420.6 554 44.8
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 5.1e-115 419.1 534 43.4
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.1e-114 417.9 542 44.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 1.9e-114 417.2 539 44.0
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.9e-114 417.2 531 44.4
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.9e-114 417.2 529 42.7
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 3.3e-114 416.4 531 43.7
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.3e-114 416.4 542 43.2
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 2.8e-113 413.3 534 44.4
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.1e-112 411.4 551 42.6
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.1e-112 411.4 524 44.5
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 5.3e-112 409.1 536 43.8
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.2e-111 407.9 524 44.1
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 2.6e-111 406.8 539 43.2
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.8e-111 405.6 523 43.8
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 9.9e-111 404.8 526 44.1
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.2e-110 403.7 538 42.9
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.9e-110 402.5 527 43.3
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 4.9e-110 402.5 538 43.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.4e-109 401.0 530 43.0
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.9e-109 400.6 544 42.3
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 6.0e-108 395.6 282 67.0
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.0e-107 393.3 540 41.3
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.9e-106 390.6 543 43.3
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.8e-104 384.0 452 47.6
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 2.4e-104 383.6 533 42.0
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.5e-103 380.9 542 41.0
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 2.0e-103 380.6 539 40.4
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 5.8e-103 379.0 542 42.1
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 1.4e-101 374.4 444 47.1
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.9e-101 374.0 534 42.9
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 9.3e-101 371.7 534 42.9
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.8e-99 367.5 525 41.5
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.7e-99 365.5 523 42.4
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.5e-98 364.4 331 57.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 7.4e-98 362.1 543 39.4
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.8e-97 360.1 529 40.8
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 2.8e-97 360.1 534 40.4
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.1e-96 356.7 527 40.2
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.5e-95 354.4 527 40.2
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.5e-95 354.4 527 40.2
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.5e-95 354.4 527 40.2
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.5e-95 354.4 528 41.7
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.9e-93 347.4 535 39.8
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.2e-93 346.3 585 38.6
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.9e-90 337.4 534 39.0
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 4.8e-89 332.8 519 38.5
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 6.3e-89 332.4 418 44.0
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 7.6e-87 325.5 420 43.3
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.3e-86 324.7 557 37.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.3e-78 298.1 330 51.2
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 6.7e-75 285.8 482 39.2
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.3e-74 283.5 582 34.0
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 8.2e-73 278.9 310 47.4
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.2e-71 275.0 612 31.4
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.1e-69 268.5 507 35.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 3.9e-67 260.0 541 34.4
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.0e-63 247.7 283 47.7
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 2.7e-60 237.3 405 37.0
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 2.0e-55 221.1 315 41.9
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 2.1e-52 211.1 566 30.0
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.6e-52 210.3 222 47.3
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 4.5e-47 193.4 561 29.4
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 4.5e-39 166.8 454 30.2
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.3e-38 165.2 298 36.9
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 4.3e-37 160.2 328 34.5
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 1.2e-34 152.1 549 26.6
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 2.4e-32 144.4 195 40.0
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 3.9e-30 137.1 320 29.4
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.4e-24 118.6 124 51.6
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 2.8e-20 104.4 201 33.8
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 2.3e-19 101.3 105 51.4
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.1e-16 92.4 245 29.4
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 5.4e-16 90.1 199 31.2
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 3.5e-15 87.4 292 27.4
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 5.6e-13 80.1 70 55.7
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 5.6e-13 80.1 111 42.3
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.1e-12 78.2 100 43.0
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.8e-11 75.1 103 36.9
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 8.9e-11 72.8 97 42.3
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-09 68.6 188 27.1
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.9e-09 67.8 191 27.7
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-08 65.9 78 35.9
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.4e-08 63.5 156 33.3
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-07 61.6 63 42.9
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.7e-06 58.5 151 29.8
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-06 57.8 96 37.5


User provided reference genes

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